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11 protocols using epr finger dewar

1

Resonance Raman Spectroscopy at Cryogenic Temperature

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Resonance Raman samples were excited at 379.5 nm using continuous wave excitation from an Ar+ ion (Innova Sabre 25/7) laser. The samples were immersed in a liquid nitrogen cooled (77 K) EPR finger dewar (Wilmad). Data were recorded for 10 min with an incident power of ~5 mW at the sample. To minimize photodecomposition, samples were manually rotated (~10 rotations/min) during the measurement. The spectra were recorded using a Spex 1877 CP triple monochromator with 1200, 1800, and 2400 grooves/mm holographic spectrograph gratings and detected by an Andor Newton CCD cooled to −80 °C. Resonance Raman data were processed using SpectraGryph software, version 1.2 (Dr. Friedrich Menges SoftwareEntwicklung, Oberstdorf, Germany).
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2

Low-Temperature Raman Spectroscopy

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Samples were excited at 647.1 nm using a Coherent I90C−K Kr+ ion laser, while the sample was immersed in a liquid nitrogen cooled (77 K) EPR finger dewar (Wilmad). The power was ∼40 mW at the sample. Data were recorded for 20 min while rotating the sample to minimize photodecomposition. The spectra were recorded using a Spex 1877 CP triple monochromator with a 1200 grooves/mm holographic spectrograph grating and detected by an Andor iDus CCD cooled to −80 °C. Raman energies were calibrated using Na2SO4 and citric acid. Frequencies are accurate to within 2 cm−1.
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3

Spectroscopic Characterization of Heme-Peroxo Complexes

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In a glovebox, 1 mM solutions of (F8)FeII in THF were prepared, transferred to a rR tube, and capped with tight-fitting septa. The sample tubes were placed in a cold bath (dry ice/acetone) and oxygenated using 16O2 or 18O2 gases. The oxygenated samples were set in a cold bath for 10 min, and to the cold THF solution of [(F8)FeIII-(O2•−)] (S) was added 1 equiv of CoCp2 for complex [(F8)FeIII-(O22−)] (P). Subsequently, 1 equiv of [(LutH+)](OTf) was added for complex [(F8)FeIII-(OOH)] (HP). The sample tubes were then frozen in liquid N2 and sealed by flame. Resonance Raman samples were excited at 413 nm using a Coherent I90C-K Kr+ ion laser while the sample was immersed in a liquid nitrogen cooled (77 K) EPR finger Dewar (Wilmad). Power was ~2 mW at the sample, which was continuously rotated to minimize photodecomposition. The spectra were recorded using a Spex 1877 CP triple monochromator and detected by an Andor Newton CCD cooled to −80 °C.
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4

Resonance Raman Spectroscopy of Copper Proteins

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Resonance Raman (rR) samples were prepared by addition of Cu(II) and Cu(I) to apoprotein. The rR samples were excited at 840 nm using continuous wave excitation from a Lighthouse Photonics Sprout-G pumped SolsTiS-PX Ti: Saph laser with a power of ~100 mW at the sample. The sample was immersed in a liquid nitrogen cooled (77 K) EPR finger dewar (Wilmad). Data were recorded while rotating the sample manually to minimize photodecomposition. The spectra were recorded using a Spex 1877 CP triple monochromator with a 1200 grooves/mm holographic grating and detected by an Andor iDus CCD cooled to −80 °C. Spectra were energy calibrated with citric acid. The protein spectra were normalized to the ice peak at ~230 cm−1. The rR data was processed using SpectraGryph version 1.2 (Dr. Friedrich Menges Software-Entwicklung, Oberstdorf, Germany) and Origin 2018b software.
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5

Characterization of Metal Complexes

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All reagents and solvents purchased and used were of commercially available quality except as noted. MeTHF and THF were distilled over Na/benzophenone under Ar. The ligands XTMPA (X = −H, −NH2, −NH2,CH3, −CH3, and −(CH3)2) and complexes [(XTMPA)CuI]BArF (BArF = B(C6F5)4), (F8)56FeII, (F8)57FeII, and d8-F8FeII were synthesized as previously described.107 (link),108 ,123 (link),124 (link),138 (link)–142 (link) Preparation and handling of air-sensitive complexes were performed in a Vac atmosphere OMNI-LAB drybox or under argon atmosphere using standard Schlenk techniques. Solvent deoxygenation was achieved by bubbling Ar through the desired solvent for ≥45 min via an addition funnel connected to a receiving Schlenk flask. UV–vis measurements were carried out by using a Carey-50 Bio spectrophotometer with a 10 mm path quartz cell. The spectrometer was equipped with Cary WinUV Scanning Kinetics software and a Unisoku thermostat cell holder for low-temperature experiments. All NMR spectra were recorded in 9 in., 5 mm o.d. NMR tubes on Bruker 300 NMR instrument equipped with a tunable deuterium probe to enhance deuterium detection. The 2H chemical shifts are calibrated to natural abundance deuterium solvent peaks. Resonance Raman samples were excited at a variety of wavelengths (413 nm excitation unless otherwise noted with data), using either a Coherent 190C-K Kr+ ion laser, a Coherent 25/7 Sabre Ar+ ion laser, or an Ar+ pumped Coherent Ti:Saph laser while the sample was immersed in a liquid nitrogen cooled (77 K) EPR finger Dewar (Wilmad). For data collection at temperatures between −110 °C and −90 °C, the finger dewar was filled with various solvent/N2 cooling baths, using a thermocouple thermometer to monitor the temperature at sample point in situ. Power was ~2 mW at the sample for the high-energy lines and >200 mW at the low-energy lines. Data were recorded while rotating the sample to minimize photodecomposition. The spectra were recorded using a Spex 1877 CP triple monochromator with either a 600, 1200, or 2400 grooves/mm holographic spectrograph grating and detected by an Andor Newton CCD cooled to −80 °C (for high-energy excitation) or an Andor IDus CCD cooled to −80 °C (for the low-energy excitation). Spectra were calibrated on the energy axis to toluene. Excitation profiles were intensity calibrated to the solvent (MeTHF) by peak fitting in the program Origin. EPR spectra were collected with an ER 073 magnet equipped with a Bruker ER041 X-Band microwave bridge and a Bruker EMX 081 power supply: microwave frequency = 9.42 GHz, microwave power = 0.201 mW, attenuation = 30 dB, modulation amplitude = 10 G, modulation frequency = 100 kHz, temperature = 10 K.
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6

Resonance Raman Spectroscopy of Fe-O2 Complexes

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[(PImH)FeIII(O2•−)] (2). In the glovebox, 2 mM solutions of an (PImH)FeII in THF were prepared and transferred to rR tubes and capped with tight-fitting septa. The sample tubes were placed in a cold bath (dry ice/acetone) and oxygenated using 16O2 or 18O2 gases. The oxygenated samples were set in a cold bath for 10 min, after which the sample tubes were frozen in liquid N2 and sealed by flame. rR samples were excited at 413 nm, using either a Coherent I90C–K Kr+ ion laser as the sample was immersed in a liquid-nitrogen-cooled (77 K) EPR finger Dewar (Wilmad). Power was ~2 mW at the sample, which was continuously rotated to minimize photodecomposition. The spectra were recorded using a Spex 1877 CP triple monochromator, and detected by an Andor Newton CCD cooled to −80 °C. rR [FeIII−(O2•−)] (2): νO−O, 1171 cm−1 (Δ18O2, −61 cm−1); νFe−O, 575 cm−118O2, −24 cm−1).
[(PImH)FeIICuI]+(3), [(PImH)FeIII(O22−)CuII]+(3a), and [(DCHIm)(PImH)FeIII(O22−)CuII]+(3b). In the glovebox, 5 mM solutions of an equimolar mixture of (PImH)FeII and [CuI(CH3CN)4](B(C6F5)4) in THF were prepared and transferred to rR tubes and capped with tight-fitting septa. The sample tubes were placed in a cold bath (dry ice/acetone) and oxygenated using 16O2 and 18O2. The labeled gases were cooled in dry ice for 5 min and injected through the solution by using a Hamilton gastight syringe. The oxygenated samples were set in a cold bath for 10 min, after which the sample tubes were frozen in liquid N2 and sealed by flame. To the cold THF solution (at −80 °C, acetone–dry-ice bath) of 3a was added 1.5 equiv of DCHIm (3.5 mg of DCHIm in 0.5 mL of THF) for complex 3b. rR [(PImH)FeIII−(O22−)−CuII]+ (3a): νO−O, 799 cm−118O2, −48 cm−1); νFe−O, 524 cm−1 (Δ18O2, −23 cm−1). [(DCHIm)(PImH)FeIII−(O22−)−CuII]+ (3b): νO−O, 817 cm−118O2, −55 cm−1); νFe−O, 610 cm−118O2, −26 cm−1).
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7

Spectroscopic Characterization of Copper(I) Complex

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All reagents and solvents were of commercially available quality except as noted. Acetone was distilled from Drierite under argon atmosphere. [(MeAN)CuI](BArF) (BArF: B(C6F5)4) was synthesized as previously described.24 (link) Sodium phenolates were obtained using a synthetic method similar to previous results.23 (link) All UV–vis measurements were carried out using a Hewlett-Packard 8453 diode array spectrophotometer with a 10 mm quartz cell. The spectrometer was equipped with HP Chemstation software and a Unisoku cryostat for low temperature experiments. 1H NMR spectra were recorded on a Bruker 400 instrument. Resonance Raman (rR) samples were excited using a Coherent I90C–K Kr+ ion laser at 413.1 or 568.2 nm while the sample was immersed in a liquid-nitrogen-cooled (77 K) EPR finger dewar (Wilmad). Power was ~20 mW at the sample for the 413.1 nm line and ~130 mW at 568.2 nm. Data were recorded while rotating the sample to minimize photodecomposition. The spectra were recorded using a Spex 1877 CP triple monochromator with 600, 1200, or 2400 grooves/mm holographic spectrograph grating and detected by an Andor Newton CCD cooled to −80 °C (413.1 nm) or an Andor IDus CCD cooled to −80 °C (568.2 nm). Spectra were calibrated on the energy axis to toluene at room temperature.
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8

Resonance Raman Spectroscopy of Dioxygen Complexes

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Samples were excited at a variety of wavelengths, using either a Coherent I90C-K Kr+ion laser, Liconix HeCd laser, a Coherent 25/7 Sabre Ar+ ion laser, or a Lighthouse Photonics Sprout-D pumped M-Squared SolsTiS Ti:Saph laser while the sample was immersed in a liquid nitrogen cooled (77 K) EPR finger dewar (Wilmad), or cooled at 110 K through contacted with the liquid nitrogen cooled sample holder. The laser power (<2 mW) and sample spinning conditions were set such that the RR spectra obtain before and after extended data acquisition showed no detectable differences. Resonance Raman sample preparation: In a typical experiment, 0.650 mL of a complex (PIm)FeII (1) (2 mM) solution in THF was placed in a 9 mm economy rubber septum capped NMR tube. After cooling the NMR tube to −80 °C (acetone/N2(liq) bath), O2(g) was bubbled through the solution mixture to form the complex [(PIm)FeIII(O2•−)] (2). Similar to the procedure used for UV–vis experiments, complex [(PIm)FeIII(OON═O)] (3) was prepared by removing excess of dioxygen by vacuum/Ar cycles from 2 and careful addition of NO(g) was carried out using three-way gastight syringe. Complex [(PIm)FeIII](NO3)] (4b) was prepared by thermal decay of complex 3. After generation of all complexes, tubes were frozen in N2(liq) and flame-sealed. Isotopically labeled (18O2/15N18O) samples were prepared in analogous manner.
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9

Spectroscopic Characterization of Porphyrin Complexes

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All reagents and solvents used were of commercially available quality and used without further purification except as noted. Inhibitor-free 2-MeTHF was distilled over Na/benzophenone under Ar and deoxygenated with Ar before use. [CuI(CH3CN)4(BArF)] and F8FeII were synthesized as previously described.81 (link),82 (link) All UV–vis measurements were carried out using a Hewlett-Packard 8453 diode Figure 8. DFT-optimized structures of LS-4DCHIm and LS-3DCHIm (porphyrin ArF groups and H-atoms omitted for clarity) depicting the relationship between structure and reactivity toward different acids. array spectrophotometer with a quartz Schlenk cuvette cell to monitor changes in Q-band and with a 0.2 cm path length cuvette to monitor changes in Soret band. The spectrometer was equipped with HP Chemstation software and a Unisoku thermostated cell holder for lowtemperature experiments. Resonance RAMAN samples were excited at a variety of wavelengths, using either a Coherent I90C-K Kr+ ion laser, a Coherent 25/7 Sabre Ar+ ion laser, or a Lighthouse Photonics Sprout-G pumped SolsTiS-PX Ti:Saph laser, while the sample was immersed in a liquid nitrogen cooled (77 K) EPR finger dewar (Wilmad). Power was ~2 mW at the sample for 413 nm excitation and 150–200 mW for lower energy excitation. Data were recorded while rotating the sample to minimize photodecomposition. The spectra were recorded using a Spex 1877 CP triple monochromator with either a 600, 1200, or 2400 grooves/mm holographic spectrograph grating, and detected by an Andor Newton CCD cooled to −80 °C (for high-energy excitation) or an Andor IDus CCD cooled to −80 °C (for the low-energy excitation). Spectra were calibrated on the energy axis to toluene. Excitation profiles were intensity calibrated to the solvent (MeTHF) by peak fitting in the program Origin.
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10

Spectroscopic Analysis of Transition Metal Complexes

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Samples were prepared by exposure of a 1 mM solution of [(F8)Fe(II)] and [(AN)Cu(I)]B(C6F5)4 in THF to dioxygen at subambient temperatures (−80°C) in 5 mm rubber septa capped NMR tubes. DCHIm (1eq) was added and the tube was flame sealed. Isotopically labelled (18O2) samples were prepared with 18O2 in an analogous manner. Samples were excited at a variety of wavelengths, using either a Coherent I90C-K Kr+ ion laser, a Coherent 25/7 Sabre Ar+ ion laser, or an Ar+ pumped Coherent Ti:Saph laser while the sample was immersed in a liquid nitrogen cooled (77 K) EPR finger dewar (Wilmad). The power was ~2 mW at the sample for the high energy lines and >200 mW at the low energy lines. Data were recorded while rotating the sample to minimize photodecomposition. The spectra were recorded using a Spex 1877 CP triple monochromator with either a 600, 1200, or 2400 groves/mm holographic spectrograph grating, and detected by an Andor Newton CCD cooled to −80° C (for high energy excitation) or an Andor IDus CCD cooled to −80°C (for the low energy excitation). Spectra were calibrated on the energy axis to toluene. Excitation profiles were intensity calibrated to the solvent (THF) by peak fitting in the program Origin.
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