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Phosphate buffered saline (pbs)

Manufactured by Merck Group
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About the product

PBS (Phosphate-Buffered Saline) is a widely used buffer solution in biological and medical research. It is a balanced salt solution that maintains a stable pH and osmotic pressure, making it suitable for a variety of applications. PBS is primarily used for washing, diluting, and suspending cells and biological samples.

Automatically generated - may contain errors

10 271 protocols using phosphate buffered saline (pbs)

1

PLGA Nanoparticle Synthesis and Characterization

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Unless otherwise noted, all chemicals were purchased from Thermo Fisher Scientific (Waltham MA, USA). Amine-terminated poly(lactide-co-glycolide) (PLGA-NH2·HCl; 10k MW, 50 : 50 lactic : glycolic acid) was purchased from Nanosoft Polymers (Winston-Salem NC, USA). Polyvinyl alcohol (PVA; MW 13 000–23 000, 87–89% hydrolyzed), 2-(N-morpholino) ethanesulfonic acid (MES), phosphate buffered saline (PBS) tablets, dimethyl sulfoxide (DMSO; ≥99.5%), methanol (>99.8%), Triton X-100, DAPI, paraformaldehyde, acrylamide, N,N′-methylenebisacrylamide and ammonium persulfate were purchased from Sigma-Aldrich (St. Louis MO, USA). Sodium dodecyl sulfate was purchased from Invitrogen. Nile Red dye was purchased from TCI (Portland OR, USA), while 1-ethyl-3-(3-dimethylaminopropyl)-carbodiimide (EDC) and citrus pectin (CP) were purchased from Alfa Aesar (Haverhill MA, USA). TD139 was purchased from Selleck Chemicals (Houston TX, USA), and recombinant human tissue growth factor β1 (TGFβ1) was purchased from R&D Systems (Minneapolis MN, USA) Antibodies for western blotting were obtained as follows: anti-galectin-3 (Invitrogen), anti-α-SMA and -vinculin (Abcam), and anti-β-catenin (SantaCruz). Polyvinylidene fluoride (PVDF) membrane, loading-/running gel buffers and Tween-20 were purchased from Bio-Rad (Hercules CA, USA), and an ECL Western blot analysis kit was purchased from Cytiva (Marlborough MA, USA). A549 human lung cancer epithelial cells and MRC-5 human lung fibroblasts were purchased from the American Type Culture Collection (ATCC; Manassas VA, USA). WT C57BL/6 mice were purchased from The Jackson Lab (Bar Harbor ME, USA).
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2

Oxidative Stress in Smoking Physicians

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To detect the differences in oxidative stress indicators among physicians with different specialization who smoke different types of cigarettes, 10 ml of blood from cubital vein was collected from the participants into the test tube with heparin and placed in a secured test tube that was used for laboratory tests. To measurement of intracellular hydroxyl activity, hydrogen peroxide and other reactive oxygen species (ROS) in the cytosol, the Cellular Reactive Oxygen Species (ROS) Assay Kit (Creative Biolabs Inc, NY, USA) was used. The heparin-treated blood samples in a 50-ml tube were diluted with phosphate-buffered saline (PBS) (Sigma Aldrich, MO, USA) in a 1:3 ratio. Gradisol L (Aqua-Med, Lodz, Poland) was introduced into a 15 ml test tube and then blood suspended in PBS was added into in a ratio 1:1 to maintain the phase boundary. Then the tubes were centrifuged for 20 min at 20 °C, 2000 rpm and a ring of interphase mononuclear cells was collected. The collected lymphocytes were twice washed in PBS and centrifuged at 4 °C at 200 g. Each sample of lymphocytes were stained with 100 µl of H2DCFDA working reagent at 50 µM and incubated for 1 h at 37 °C in 96-well plates. Then, cells were washed once in 1x Assay Buffer and treated with hydrogen peroxide (H2O2) at 50 µM, which was used as a positive control. In the next step, the cells were incubated for 1 h. Signal intensity was measured using a fluorescence microplate reader at Ex/Em = 485/530 nm. The fluorescence intensity of the sample is directly proportional to the level of ROS in the cytosol. The final results are the mean of three independent measurements.
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3

Quantifying Human PD-L1 Protein Interactions

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Skim milk powder (Cat# 1.15363.0500), bovine serum albumin (BSA) (Cat# K32491618-406) and TMB (Cat# 613544) were supplied by Merck (Darmstadt, Germany). Phosphate-buffered saline (PBS) (Cat# D1408) was provided by Sigma. Tween 20 solution (Cat# A1389) was supplied by AppliChem (Darmstadt, Germany).
The recombinant proteins human PD-L1/Fc chimera (R&D Systems, 156-B7, Nordenstadt, Germany), human PD-1/Fc chimera (R&D Systems, 1086-PD), and human CD80/Fc chimera (R&D Systems, 140-B1) were used as competitive ELISAs and human PD-L1 His tag (R&D Systems, 9049-B7) in indirect ELISAs described below. Streptavidin–peroxidase conjugate (Sigma, S5512, Marlborough, MA, USA) was used at 1/30,000 dilution.
Antibody anti-human PD-L1 Biotinylated was provided by R&D Systems (Cat# BAF156). Sheep anti-mouse IgG conjugated to HRP (Cat# A6782), HRP-conjugated goat anti-rat IgG polyclonal (Cat# A9037), HRP-conjugated goat anti-rabbit IgG polyclonal (Cat# A0545), goat anti-mouse IgG1 (Cat# M5532), goat anti-mouse IgG2a (Cat# M5657), goat anti-mouse IgG2b (Cat# M5782), goat anti-mouse IgG3 (Cat# M5907), goat anti-mouse IgM (Cat# M6157), and goat anti-mouse IgA (Cat# M6032) were supplied by Sigma. Commercially available monoclonal antibody specific to human PD-L1 (Biolegend, 329702, San Diego, CA, USA) was used as an inhibition positive control in competitive ELISAs. HRP-conjugated goat anti-human IgG polyclonal antibody (Jackson Immunoresearch Laboratories, 109-035-098, West Grove, PA, USA) was used at 80 ng/mL for detecting human serum IgG.
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4

Laser Scanning Confocal Microscopy for Radiation-Induced Cytoskeletal Changes

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Laser scanning confocal microscopy was used on a Zeiss LSM700 (Zeiss) confocal microscope equipped with an Axio Observer Z1(Zeiss) inverted microscope using ×100, 1.46 numerical aperture oil immersion lens for imaging. Confocal data were processed using ZEN2010 software (Zeiss). Prior to confocal analysis, 6.2 x 104 MCF-7 cells/petri were seeded in 50 x 7 mm glass petri dishes (WillCo Wells B.V., 1054SE Amsterdam). After 24 h the cells were incubated with green AuNPs (0,46 μg/mL) for 48 h and then exposed to RT at varying doses, with each sample receiving a single dose of either 2.67, 4, 6, 8 and 10 Gy. Then, the cells were washed with PBS (Sigma-Aldrich, Dorset, UK), fixed with 0.25% glutaraldehyde (Sigma-Aldrich, Dorset, UK) for 20 min at room temperature and permeabilized with 0.1% Triton X (Sigma-Aldrich, Dorset, UK) for 5 min. Afterward, the cells were stained first with DAPI (Sigma-Aldrich, Dorset, UK)) and then with Phalloidin in ATTO 488 (Invitrogen; Thermo Fisher Scientific, Inc for the nuclei and actin imaging, respectively).
Morphometric quantification (coherency of F-actin) was performed on 15 cells using the OrientationJ plugin of the ImageJ 1.53a software. This parameter indicates the local orientation of actin filaments. In particular, the value of coherency ranges from 0 (isotropic orientation) to 1 (perfectly oriented structures). Nucleus circularity and nucleus-to-cytoplasm ratios were calculated by ImageJ 1.53a software.
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5

Antioxidant Properties of Cistus Extract

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All the chemicals and solvents used were of analytical grade. Silver nitrate (Fisher Scientific, Leicester, UK), copper chloride dihydrate (Penta Chemicals Unlimited, Radiova, Prague, Czech Republic), 2,2-diphenyl-1-picrylhydrazyl (DPPH) (Sigma-Aldrich, Darmstadt, Germany), methanol (Fisher Scientific UK (Leicester, UK)), ascorbic acid (Sigma-Aldrich, Darmstadt, Germany), sodium hydroxide (Panreac Quimica SA, Barcelona, Spain), and phosphate-buffered saline (PBS) (Sigma-Aldrich, Darmstadt, Germany) were used. Distilled water was used in the entire study. Dried aqueous Cistus extract (Cistus creticus L. subsp. eriocephalus (viv.) synonym Cistus incanus subsp. Tauricus) (EXTR. CISTI E HERB. AQUOS. SICC. ECCE20, Martin Bauer Group, Vestenbergsgreuth, Germany) was donated by N.Krallis SA, Athens, Greece. According to the material specifications provided by the producers, this ingredient contains minimum 20% total polyphenols, and the composition used in extract preparation was 80% native extract and 20% excipients (18% maltodextrin Ph.Eur. and 2% silica, colloidal anhydrous Ph.Eur.).
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6

Optimizing Cardiomyocyte Maturation through Gelatin Substrates

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The maturation of cardiomyocytes can be improved
by using substrates with stiffness values similar to those of native
cardiac tissue. In this perspective, different gelatin compositions
(4, 6, 9, and 12% w/v) enzymatically gelled with two different enzyme
concentrations (50 or 100 mg/mL) were prepared and mechanically characterized
by nanoindentation.
Nanoindentation tests were performed at
physiological temperature (37 °C) and in phosphate-buffered saline
(PBS, Sigma-Aldrich, USA) solution in order to mimic the native tissue
conditions, using a Piuma nanoindenter (Optics11, NL) and controlling
the indentation depth (tip radius (r) = 49.5 μm;
cantilever stiffness (Ktip) = 0.48 N/m;
indentation depth (δ) = 5 μm for 4% and 6% w/v gelatin
samples, and δ = 3.5 μm for 9 and 12% w/v gelatin samples).
An area of 3600 μm2 was explored for each sample,
setting a scanning step size of 150 μm. To extract the mechanical
properties of the samples, the experimental curves were fitted through
the Hertz model during the first part of the loading phase of the
nanoindentation process. A Poisson’s ratio (υ) of 0.5
was assumed. According to the Hertz contact theory, the applied load
(P) can be expressed as where E* is
the effective modulus, given by where Esample is
the elastic modulus of the sample and υ’ is the Poisson’s
ratio of the indenter. Assuming that the stiffness of the nanoindenter
tip is infinitely higher than the sample (EtipEsample), the elastic modulus
of the sample can be obtained as
To select a suitable
gelatin composition,
the mechanical characterization
was complemented by a cell culture test for investigating the behavior
of cardiac cells with respect to different compositions. For this
purpose, the different gelatin solutions enzymatically gelled with
two different concentrations of enzymes were poured (192 μL)
in tissue culture plates, and neonatal rat cardiac cells (NRCCs) (∼70%
cardiomyocytes and ∼30% fibroblasts) were seeded on top (6
× 105 cells/cm2) and cultivated for 6 days
in static conditions in a standard incubator (37 °C, 5% CO2). Functional analysis on the neonatal rat cardiomyocytes
(NRCMs) was performed at the end of the culture by using carbon rod
electrodes placed at a distance of 1.1 cm.
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7

Generating Double Emulsion Picoreactors

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Double emulsion picoreactors were generated from custom fabricated PDMS devices using previously reported designs9 (link),18 (link),25 (link),27 (link),30 (link),31 (link). All input solutions were loaded into plastic syringes (BD) and connected to the PDMS device via LDPE medical tubing (Scientific Commodities Inc.). Syringe pumps drove the flow of reagents into the device, with standard flow rates of 2×25 μL/hr for two identical inner solutions of PBS (Gibco) with 1% (w/v) Tween-20 (Fisher), 125 μL/hr for the picoreactor fluorocarbon oil with the indicated concentration of dSurf (Fluigent) or PicoSurf (SphereFluidics), and 3500–3700 μl/hr for the outer sheath solution of PBS with 1% (w/v) Tween-20 and 2% (w/v) Pluronic F68 (Millipore Sigma). The PBS inner solution was labeled with 20 μM Fluorescein (Fluka).
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8

Isolation of Lamina Propria Cells from Pediatric GI Biopsies

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Paediatric IBD and non-IBD biopsies were obtained from the DOCHAS study, National Centre for Paediatric Gastroenterology, CHI-Crumlin, Dublin Ireland. Lamina propria cells were isolated from these biopsies using a modified version of the Smillie et al. Star Method56 (link). Four biopsies per patient were collected in AIM media (ThermoFisher) supplemented with CTS Immune Cell SR (Gibco, ThermoFisher). Biopsies were first rinsed in 30 ml of ice-cold PBS (Sigma Aldrich, Merck) and then transferred to 10 ml epithelial cell solution (HBSS Ca/Mg-Free (#14170112, ThermoFisher), 10 mM EDTA (Sigma Aldrich, Merck), 100 U/ml penicillin & 100 mg/ml streptomycin (#15070063, ThermoFisher), 10 mM HEPES (Sigma Aldrich, Merck), and 2% FCS (ThermoFisher) freshly supplemented with 200 μl of 0.5 M EDTA). The epithelial layer was separated from the underlying lamina propria by shaking horizontally at 37 °C for 15 min at 200 rpm. The tube was then placed on ice for 10 min and shaken vigorously 15 times. The tissues were carefully removed and placed into 10 ml of ice-cold PBS to rinse and transferred to 5 ml of enzymatic digestion mix (RPMI1640 (#21875034, ThermoFisher), 100 U/ml penicillin, 100 mg/ml streptomycin, 10 mM HEPES, 2% FCS, 50 mg/ml gentamicin (#15710064, ThermoFisher), 100 mg/ml of Liberase (#LIBTM-RO, Roche, Merck) and 100 mg/ml of DNase I (#D4263, Sigma Aldrich, Merck)). The tubes were shaken horizontally at 37 °C for 30 min at 200 rpm. After 30 min, 1 ml of FCS and 80 μl of 0.5 M EDTA were added to quench the digestion mix and the tubes were placed on ice for 5 min. The dissociated lamina propria cell solution was then filtered through a 40-μm cell strainer into a new 50 ml conical tube and rinsed through with PBS. The tube was then spun down at 400×g for 10 min, and the pelleted live cells were counted using Trypan blue exclusion (#15250061, ThermoFisher). Cells were resuspended at 1 × 106/ml in AIM-V media supplemented with CTS Immune Cell SR (Gibco, ThermoFisher), and incubated at 37 °C for 24–48 h prior to analyses by flow cytometry.
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9

Immunohistochemical Analysis of Extracellular Matrix

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Five micrometer thick sections taken from paraffin blocks with the help of a microtome were then placed on polylysine slides (Sigma, St Louis, MO, United States). After the dehydration stage, microwave application was made in citrate solution with a pH of 6 (Carlo Erba, 368,057). Sections were kept in 3% hydrogen peroxide (Dako, Glastrup, Denmark) to prevent endogenous peroxidase activity. After blocking with normal goat serum, the sections were incubated with primary antibodies, which are type I collagen (1:100, Sigma, United States), type III collagen (1:100, Sigma, United States), alpha smooth muscle actin (SMA) (1:100, RTU, Leica, BK), and Galectin-3 (1:100, RTU, Cell Marque, CA, United States). After the biotin-labeled secondary antibody (Abcam, United Kingdom) step, the tissues treated with the streptavidin-HRP kit (Santa Cruz, USA) were finally treated with 0.05% diaminobenzidine (Zymed Histostain Plus CA, United States). All washes during the staining process were performed using 1X phosphate-buffered saline (PBS, 10 mM phosphate, 137 mM NaCl, 2.7 mM KCl, pH 7.4), purchased from Sigma-Aldrich (St. Louis, MO, United States). Immunohistochemical staining results were evaluated with H-score. Staining ratio was graded semiquantitatively (0 = staining in less than 1% of cells, 1+ = staining in 1–10% of cells, 2+ = staining in 11–50% of cells, 3+ = staining in 51–80% of cells, 4+ = staining in more than 80% of cells). Staining intensity was also determined by the blind method (0 = no staining, 1 = pale, 2 = moderate, 3 = intense). Then, the total score was calculated with the formula “(1 + staining intensity/3) x staining ratio.” The highest marked immunohistochemical images for H-score are shown in Figures 2EL.
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10

Synthesis and Characterization of Eu-Doped Nanomaterials

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Copper sulphate (CuSO4·5H2O) and sodium dodecyl sulphate (SDS) were purchased from Himedia Laboratories and Sigma Aldrich, respectively. Europium nitrate (Eu(NO3)3·6H2O), ascorbic acid and sodium hydroxide were obtained from Sisco Research Laboratories Pvt. Ltd. Murine fibroblast cell line (NIH-3T3) and human epithelial cancer cell line (KB cells) were procured from NCCS, Pune. Dulbecco's Modified Eagle Medium (DMEM), fetal bovine serum (FBS), penicillin–streptomycin and trypsin–EDTA were obtained from Himedia Laboratories. Phosphate buffered saline (PBS) was purchased from Sigma Aldrich.
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