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Stereotaxic frame

Manufactured by Kopf Instruments
Sourced in United States, Germany, United Kingdom, Sweden, Malta, Morocco, Macao, Italy, Canada, Japan
About the product

The Stereotaxic frame is a laboratory instrument used to immobilize and position the head of a subject, typically an animal, during surgical or experimental procedures. It provides a secure and reproducible method for aligning the subject's head in a three-dimensional coordinate system to enable precise targeting of specific brain regions.

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The stereotaxic frame is an active product sold by Kopf Instruments through authorized distributors. Pricing for this equipment typically ranges from $5,935 to $6,975 based on information from secondary market sources.

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1 974 protocols using «stereotaxic frame»

1

Intracranial Viral Delivery in Mice

2025
Mice were anesthetized with 2.5% isoflurane and 80% O2 and head-fixed in a stereotaxic frame (David Kopf Instruments, Tujunga, CA) equipped with digital manipulator arms (Stoelting Co, Wood Dale, IL). A nose cone was used to deliver isoflurane to maintain anesthesia. Mice were given a subcutaneous injection of meloxicam (2 mg/kg) and 0.1 mL of 0.25% Marcaine around the incision site. After exposing the skill, craniotomies were made with an electric drill (Stoelting CO, Wood Dale, IL) with a ball bur attached. A Neuros 7000 series 1 µL Hamilton syringe with a 33-gauge needle (Reno, NV) connected to a remote automated microinfusion pump (KD Scientific, Holliston, MA) was used for delivery of tracers or viral constructs at a rate of 100 or 50 nL/min, respectively. Details of dye, viruses, and stereotaxic coordinates are provided in Supplementary Table 4. Following infusion, the needle was left in place for 5 min and then slowly manually retracted. Mice were placed on a heat pad for at least 30 min post-surgery before being returned to their home cage. Mice were monitored for three days post-surgery to ensure recovery. Brains were collected and imaged (see below) to confirm viral expression and injection placements and no misplacements were found.
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2

Targeted 5α-Reductase Knockdown in Rat Brain

2025
AAV constructs were obtained from Vector Biolabs (Malvern, PA). All the constructs carried the enhanced GFP reporter under the cytomegalovirus promoter and the shRNA sequence (against 5αR1, 5αR2, or scrambled) under the U6 promoter. Constructs were packaged into the AAV5 capsid, with a titer of 1.5 × 1012 GC/ml for 5αR1, 2.1 × 1012 GC/ml for 5αR2, and 1.2 × 1012 GC/ml for scrambled.
A mix of three different sequences was used to efficiently down-regulated the expression of the target of interest, specifically 5αR1: 5′-ACCGCTA-TGTACAGAGCAGATACTCTCGAGAGTATCTGCTCTGTACATA-GCTTTTT-3′, 5′-ACCGCACCATCAGTGGTACCATGACTCGAGTCA-TGGTACCACTGATGGTGCTTTTT-3′, and 5′-ACCGGGAAACTGGA-TACAAGATACCTCGAGGTATCTTGTATCCAGTTTCCC-TTTTT-3′; and 5αR2: 5′-ACCGTACTTCCACAGGACATTTATTCTC- GAGAATAAATGTCCTGTGGAAGTATTTTT-3′, 5′-ACCGGTACACAG-ATGTGCGGTTTACTCGAGTAAACCGCACATCTGTGTACCTTTT-T-3′, and 5′-ACCGCAGGAGTTGCCTTCCTTTGTCTCGAGACAA-AGGAAGGCAACTCCTGCTTTTT-3′.
Long-Evans rats were anesthetized with xylazine/ketamine (20/80 mg/kg, ip) and then placed onto a stereotaxic frame (David Kopf Instruments, Tujunga, CA). Blunt ear bars were used to avoid damage to the tympanic membrane. Under aseptic conditions, rats were shaved, and their scalp was retracted. Bilateral craniotomies were made above the target site and a 5-μl Hamilton Neuros syringe (Reno, NV) was positioned above bregma. The target locations for brain infusions were as follows: mPFC: anteroposterior (AP) + 3.0 mm, mediolateral (ML) ± 0.5 mm, dorsoventral (DV) = −3.0 mm from the dura mater; NAc: AP + 1.7 mm, ML ± 0.8 mm, DV = −7.8 mm from the dura mater. Coordinates were taken from bregma, according to the stereotaxic brain atlas (38 ). The needle was slowly lowered into the injection site, and 1 μl of AAV was infused into one hemisphere. The syringe was left in place for at least 5 min after completion of the infusion to eliminate backflow and then slowly withdrawn. This process was repeated on the other side to produce bilateral viral injections. After completing injections into both hemispheres, rats were placed back on a warming pad until the body temperature returned to normal and the recovery of normal movement. Rats were given antibiotic therapy for 2 days (enrofloxacin, Bayer HealthCare, Shawnee Mission, KS) and were allowed to recover in their home cages (single-housed) with food and water available. Behavioral testing started 14 days after surgery.
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3

Optogenetic Activation of mPFC L1INs

2025
NDNF‐Cre mice were used for optogenetic studies of mPFC L1INs. Mice were anesthetized with isoflurane and secured in a stereotaxic frame (David Kopf Instruments). Isoflurane was delivered in 21% oxygen (Wilding et al. 2017 (link)) at a rate of 500–700 mL min−1, with the concentration adjusted throughout the procedure (induction: 3%–4% [vol vol−1], surgery: 0.9%–1.5% [vol vol−1]) to maintain stable breathing and anesthesia depth. Anesthesia depth was assessed via the toe‐pinch reflex. Ophthalmic ointment (Systane) was applied for eye protection, and the fur on the head area was shaved before surgery. After exposing the skull, head‐holding angles were adjusted using a stereotaxic alignment indicator (David Kopf Instruments) to ensure the skull was leveled (bregma and lambda at equal heights) and aligned with the stereotaxic frame axes. Body temperature was maintained at 37°C using a heating pad throughout surgery.
As described previously (Gao et al. 2023 (link); Wang et al. 2023 (link)), stereotaxic injections were performed using glass pipettes (Cat# 5‐000‐1001‐X10, Drummond) pulled with a micropipette puller (RRID: SCR_021042; P1000, Sutter, USA) to achieve outer diameters of 30–50 µm. glass pipettes were polished at the tips (Micro Forge MF‐830, Narishige, Japan) and mounted on a microinjection pump (Nanoliter 2010 Injector, WPI). AAV‐EF1a‐DIO‐hChR2(H134R)‐EYFP (UNC Vector Core; RRID: SCR_023280) was injected bilaterally at a rate of 50–100 nL min−1, with a volume of 300 nL and a titer of 1 × 1012 vg mL−1. Injection sites were determined using the following coordinates: mPFC [anterior–posterior (AP) = +2.10 mm, medial–lateral (ML) = ±0.25 mm, and dorsal–ventral (DV) = from −1.40 mm retracted to −1.20 mm during viral infusion].
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4

In Vivo Electrophysiology of Serotonergic Neurons

2025
In vivo electrophysiological experiments were performed as previously described [21 (link),30 (link),31 (link)]. The rats were anesthetized with chloral hydrate (0.4 g/kg, i.p.) and mounted in the stereotaxic frame (David Kopf Instruments, Tujunga, CA, USA). Their scalp was opened, and a 3 mm hole was drilled in the skull for insertion of electrodes. Glass electrodes were pulled with a DMZ-Universal Puller (Zeitz-Instruments GmbH, Martinsried, Germany) to a fine tip of ~1 µM and filled with 2 M sodium chloride (NaCl). The impedance of the electrodes was 4–6 MΩ. The electrodes were lowered through the DRN using the hydraulic micro-positioner (David Kopf Instruments, Tujunga, CA). The action potentials generated by the neurons were recorded using the AD Instruments Extracellular Recording System (Dunedin, New Zealand). During the experiment, the rats’ body temperatures were maintained at 37 °C with a heating pad (Gaymor Instruments, Orchard Park, NY, USA). The 5-HT neurons of the DRN were identified according to the waveform of their action potential and the pattern of their generation, as explained in our previous works [21 (link),30 (link),31 (link)]. The neuronal activity was recorded and analyzed using the LabChart software, version 7 (AD Instruments, Dunedin, New Zealand). The burst activity characteristics were calculated using the burstiDAtor software (Nikolaas N. Oosterhof, Trento University, Trento, Italy; URL www.github.com/nno/burstidator; accessed on 23 March 2025). The onset of a burst was signified by the occurrence of two spikes with an interspike interval (ISI) < 0.01 s. The termination of a burst was defined as an ISI > 0.010 s for 5-HT neurons [32 (link)].
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5

Chemogenetic Activation of ACC-subep-ChAT+ Circuit in Mice

2025
Stereotaxic injections were performed in mice secured in a stereotaxic frame (David Kopf Instruments) under isoflurane anesthesia. For in vivo chemogenetic activation of the ACC-subep-ChAT+ circuit, 300 nL of the viral vector (titer: 2.2 × 1013 GC/mL) pAAV-hSyn-DIO-hM3D(Gαq)-mCherry was injected into the ACC region of Cr-Cre (P30) mice. The injection was performed at the following coordinates relative to Bregma: anterior-posterior (AP) +0.8 mm, mediolateral (ML) ± 0.25 mm, dorsoventral (DV) −0.3 mm from the brain surface. Viral infusion was performed slowly for over 10 min using a Nanoject injector (Drummond Scientific, Broomall, PA, USA) connected to a glass pipette. To ensure optimal viral distribution, the pipette was left in place for an additional 10 min post-injection before being retracted.
Local inhibition of LRRC8D and SLC6A1 was achieved using DCPIB and CI966, respectively, using a micro-osmotic pump (Model 1003D, Alzet, Cupertino, CA, USA) for drug delivery. DCPIB (4-(2-butyl-6,7-dichloro-2-cyclopentyl-2,3-dihydro-1-oxo-1H-inden-5-yl)oxy]butanoic acid) is a potent and selective inhibitor of volume-regulated anion channels (VRACs). It effectively inhibits VRAC-mediated chloride ion (Cl) currents at concentrations that do not significantly affect other chloride channels, such as the cystic fibrosis transmembrane conductance regulator (CFTR), ClC chloride channels, or calcium-activated chloride channels (CaCC) [24 (link)]. DCPIB is a potent inhibitor of VRAC-mediated conductance [25 (link)]. CI-966 (NNC-711; 1-(2-((Diphenylmethylene)amino)oxy)ethyl)-1,2,5,6-tetrahydro-3-pyridinecarboxylic acid) is a potent and selective inhibitor of γ-aminobutyric acid (GABA) uptake. It exerts its effects by targeting GABA transporter 1 (GAT-1) [26 (link),27 (link)]. During the same surgical session, a cannula was implanted into the LV of Cr-Cre (P30) mice at the following coordinates: AP +0.8 mm, ML ± 0.65 mm, DV −2.1 mm from the brain surface. An amount of 300 nL of the pAAV-hSyn-DIO-hM3D(Gαq)-mCherry virus was injected into the ACC as previously described.
Cortical circuit activation was achieved via intraperitoneal administration of DREADD agonist C21 10 h after connecting the osmotic pump, which facilitated drug perfusion. The osmotic pump delivered the drugs at a flow rate of 1 µL per hour for a duration of 12 h, following the manufacturer’s instructions.
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Top 5 protocols citing «stereotaxic frame»

1

Unilateral V1m Electrophysiology in Mice

Single shank Michigan electrodes (A16-3mm-100-703-CM15) were implanted unilaterally into the left primary monocular visual cortex, (V1m) of 9 wk old caspase-1 KO (n=9) and WT (n=9) female mice. Each mouse was anesthetized under 1.5% isoflurane and mounted onto a stereotaxic frame (Kopf Instruments, Tujunga, CA). The top surface of the skull was exposed and a drill sized craniotomy was made centered at 1 mm anterior to Lambda and 1.5 mm lateral to midline using a high speed dental drill and a .007 drill bit. Saline was applied continuously onto the skull to dissipate heat from the high-speed drill. Extra care was taken to prevent damage to the dura by reducing the drill speed and gently manually feeling the resistance of the skull when the dural blood vessels were visible through the opaque thin skull. A total of three bone screws were installed bilaterally over the primary motor cortex as well as over the contralateral visual cortex. The reference wire was connected to the bone screw over the contralateral visual cortex, while the ground wire was connected to both bone screws over the motor cortex. Arrays were inserted at ~2mm/s using a stereotaxic manipulator until the top edge of the last recording site was at the edge of the brain surface. Insertion of the array was visualized by a tilted surgical scope. The silicon device and the craniotomy were sealed carefully with silicone (Kwik-sil) and a headcap was created using UV-cured dental cement (Pentron Clinical, Orange CA). Body temperature was maintained throughout the procedure using a warm water pad (HTP 1500, Adroit Medical Systems, Loudon TN). 0.3mg/kg buprenorphine was administered twice daily for three days as a post-operative analgesic. All animal care and procedures were performed under the approval of the University of Pittsburgh Institutional Animal Care and Use Committee and in accordance with regulations specified by the Division of Laboratory Animal Resources. (For WT: N=9 for 1–8 days, N=8 for 14–35 days, N=6 for 42–133 days, and N=4 for 140–185 days. For caspase-1 KO: N=9 for 14–35 days, N=7 for 42–133 days, N=5 for 140–175 days, and N=4 for 182 days.)
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2

Stereotaxic Adenoviral Manipulation of VMH

Rats were placed in a stereotaxic frame (David Kopf Instruments; Tujunga, CA, USA) under ketamine/xylazine anesthesia. The VMH was targeted bilaterally by using a 25 gauge needle (Hamilton; Reno, NV, USA) connected to a 1 μl syringe. The injection was directed to stereotaxic coordinates 2.3/3.3 mm posterior to the bregma (two injections were performed in each VMH), ±0.6 mm lateral to midline and 10.2 mm below the surface of the skull, as described previously (López et al., 2008, 2010; Martínez de Morentin et al., 2012; Varela et al., 2012 ). Adenoviral vectors (green fluorescent protein [GFP], AMPKα-DN or AMPKα-CA; 1012 pfu/ml [Viraquest; North Liberty, IA, USA]) were delivered at a rate of 200 nl/min for 5 min (1 μl/injection site). GFP control animals were injected each time the stereotaxic frame was used for experimental animals to confirm injection site accuracy (see Figure S6).
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3

Stereotaxic Targeting of Hypothalamic Nuclei in Rodents

Animals were placed in a stereotaxic frame (David Kopf Instruments; Tujunga, CA, USA) under ketamine/xylazine anesthesia. The ARC and the VMH were targeted bilaterally using a 25-gauge needle (Hamilton; Reno, NV, USA). The injections were directed to the following stereotaxic coordinates: a) for the VMH of rats: 2.8 mm and 3.2 mm posterior to the bregma, ± 0.6 mm lateral to midline and 10.1 mm deep; b) for the VMH of mice: 1.7 mm posterior to the bregma, ± 0.5 mm lateral to midline and 5.5 mm deep c) for the ARC of rats 2.8 mm posterior, ± 0.3 mm lateral to bregma and 10.2 mm deep. For acute treatments, T3 (Sigma-Aldrich, St Louis, MO, USA; 16 ng in 1 μL of 1:50 saline:DMSO; during 12 hr) or vehicle (100 nL of 1:50 saline:DMSO) were given. For chronic nuclei-specific treatments, T3 was given at 4 ng/day (in saline + 1 mM NaOH) and vehicle (saline + 1 mM NaOH) used as control. The selection of these doses was based on previous reports (López et al., 2010 (link), Varela et al., 2012 (link), Martínez-Sánchez et al., 2017 (link)). Nuclei-specific injections were delivered via a permanent 28-gauge stainless steel cannula (Plastics One, Roanoke, VA, USA) inserted bilaterally either in the VMH or ARC. A catheter tube was connected from each infusion cannula to an osmotic minipump flow moderator (Model 1007D; Alzet Osmotic Pumps, Cupertino, CA, USA). These pumps had a flow rate of 0.5 μL/hour during 7 or 28 days of treatment. The osmotic minipumps were inserted in a subcutaneous pocket on the dorsal surface created using blunt dissection and the treatment was given for 7 or 28 days (Imbernon et al., 2013 (link), Contreras et al., 2014 (link)).
Adenoviral (GFP, AMPKα-DN, AMPKα-CA, GRP78-DN, TR-DN and SPTLC1-2; Viraquest; North Liberty, IA, USA and SignaGen; Rockville, MD, USA) or adeno-associated (Cre; SignaGen; Rockville, MD, USA) vectors were delivered in the VMH of rats or mice using the aforementioned coordinates at a rate of 200 nl/min for 5 min for rat and 10 min for mouse (1 μl/injection site) as previously reported (López et al., 2010 (link), Varela et al., 2012 (link), Martínez de Morentin et al., 2014 (link), Contreras et al., 2014 (link)). Animals were treated for 5-7 days (adenovirus) or 30 days (Cre).
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4

Controlled Cortical Impact Injury in Mice

C57BL/6 male mice 4 weeks old were subjected to moderate CCI injury as previously described (Sullivan et al., 1999a (link),b (link); Hall et al., 2004 (link), 2005; Saatman et al., 2006 (link)). Briefly, the mice were anesthetized with 2.5–4% isoflurane and placed in a stereotaxic frame (Kopf Instruments, Tujunga, CA) prior to TBI. Using sterile procedures, the skin was retracted, and a 4-mm craniotomy centered between the lambda and bregma sutures was performed. A point was identified midway between the lambda and bregma sutures and midway between the central suture and the temporalis muscle laterally. The skullcap was carefully removed without disruption of the underlying dura. Prior to the injury, the head of the animal was angled on a medial to lateral plane so that the impacting tip was perpendicular to the exposed cortical surface. This was accomplished by rotating the entire stereotaxic frame in the transverse plane while leaving the nose bar at 5.0. The mouse CCI model uses a pneumatic impactor with which the experimenter can independently control the contact velocity and the level of cortical deformation, thus altering the severity of the injury. In these experiments, the contact velocity was set at 3.5 m/sec and the amount of deformation was set at 0.5 mm, which results in an injury of moderate severity. After injury, a 4-mm disk made from dental cement (Dentsply Trubyte) and Surgicel (Johnson and Johnson, Arlington, TX) was laid over the craniotomy site and adhered to the skull using cyanoacrylate and allowed to dry before the wound was stapled closed. During all surgical procedures and recovery, the core body temperature of the animals was maintained at 36–37°C using a heating pad and a Hova-Bator incubator (37°C; model 1583; Randall Burkey Co.). Sham (noninjured) animals received craniotomy, but no CCI injury.
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5

Optogenetic Manipulation in Mouse Brain

Six-week-old C57BL/6 mice (P35–45) were initially induced with ketamine (80 mg kg−1) and xylazine (10 mg kg−1) and placed into a stereotaxic frame (David Kopf Instruments), before isoflurane anesthesia (~1% in O2, v/v). A craniotomy (∼1 mm in diameter) was made above the injection site. Virus suspensions were slowly injected (100 nl min–1) using a 34 G beveled needle (Nanofil syringe, World Precision Instruments). After injection, the needle was left in place for an additional 5 min and then slowly withdrawn. The surgical procedure was either continued with optic fiber or optrode drive implantations (described below), or the surgical incision was closed with tissue glue and 0.05 mg kg−1 Buprenorphine was subcutaneously injected for post-surgical analgesia. Injections targeting the medial prefrontal cortex (mPFC) were made 1.8 mm anterior, 0.3 mm lateral and 2.53 mm ventral to bregma. Basolateral amygdala (BLA) injection coordinates were 1.15 mm posterior, 3.0 mm lateral, and 5.0 mm ventral to bregma. For mPFC injections, 1 µl of the indicated virus was injected. For fear extinction experiments mice were bilaterally injected with 500 nl AAV2/1&2.CamKIIα.stGtACR2-Fred.WPRE or AAV2/1&2.CamKIIα.eYFP.WPRE with a genomic titer in the range of 2–3 x 1011 vp ml−1.
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