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409 protocols using bca protein assay kit

1

Metabolic Labelling of CFTR Variants

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Metabolic labelling assays were performed as previously described [5 (link)] with the following modifications. Cells were serum starved in DMEM without methionine and cysteine (ThermoFisher Scientific, Cat. 21013024) for 45 min, and pulse-labelled in 100 μCi/mL EasyTag™ Express Protein Labeling Mix, [35S] (Perkin Elmer, Cat. NEG772) for 15 min (WT CFTR) or 1 hour (ΔF508-CFTR). Cells were rinsed with cold PBS containing 1mM MgCl2 and 0.1mM CaCl2 and chased in DMEM supplemented with 10% FBS, 2 mM glutamine, 2 mM methionine and 2 mM cysteine. Cells were harvested at 0, 1, 2, or 3 h in 500 μL RIPA buffer. Soluble material was separated by centrifugation at 20,000 x g for 5 min at 4°C. Protein concentrations were normalized using the BCA Protein Assay Kit, and pulse-labelled CFTR was isolated by immunoprecipitation with a mixture of CFTR monoclonal antibodies (Millipore, MAB3480 (1.5 μg) and MAB3484 (1.5 μg) per sample) and 50 μL protein G agarose beads (Millipore, Cat: 16–266) for 2.5 hours at 4°C. Beads were washed 3 times in RIPA buffer and proteins were eluted in Laemmli loading buffer. CFTR bands were separated by 6% SDS-PAGE and radioactive bands were detected using a Typhoon scanner (GE Healthcare), then quantified using ImageJ 1.46r software.
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2

DPC12 Cell Western Blot Analysis

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DPC12 Cells were planted into 6-well plates at 4 × 105 cells per well and treated with HE (50 and 100 µg/mL) and NGF (50 ng/mL) for 24 and 48 h. Cells were harvested and lysed with RIPA buffer (Sigma-Aldrich) containing 1% protease inhibitor cocktail (Sigma-Aldrich) and 2% PMSF (phenylmethanesulfonyl fluoride) (Sigma-Aldrich). After protein concentration detection by BCA Protein Assay Kit (Millipore, Billerica, MA, USA), 30 μg of proteins were separated using a 10% SDS-PAGE gel and transferred electrophoretically onto PVDF membranes. After blocking with 5% bull serum albumin (BSA) for 4 h, the transferred membranes were blotted with primary antibodies (β-tubulin III and glyceraldehyde-3-phosphate dehydrogenase (GAPDH)) (Abcam, Cambridge, MA, USA) at 4 °C overnight at a dilution of 1:1000, followed by incubation with horseradish peroxidase-conjugated secondary antibodies at a dilution of 1:2000 (Santa Cruz, CA, USA). Chemiluminescence was detected using ECL detection kits (Millipore) and imaging system (Biospectrun 600). The intensity of the bands was quantified by scanning densitometry using software Image J (National Institutes of Health, Bethesda, MD, USA).
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3

Protein Extraction and Western Blot Analysis

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The heart tissues or neonatal mouse primary cardiomyocytes (NMPCs) were lysed with RIPA buffer (P0013B, Beyotime, Shanghai, China) for total protein extraction. The protein concentration was determined using the BCA protein assay kit (71285, Millipore, Bedford, MA, USA) according to the manufacturer’s protocol. 35 μg protein was subjected to SDS-PAGE for electrophoresis, transferred to 0.45 μm PVDF membranes (IPVH00010, Millipore, Bedford, MA, USA), and immunoblotted with antibodies. The bands were quantified using the ImageJ software program (v.1.45, National Institutes of Health, Bethesda, MD, USA). The antibodies are listed in Supplementary Table 1.
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4

Comprehensive Western Blot Analysis Protocol

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Western blot analysis was performed as previously reported [26 (link)]. Total protein was prepared with the RIPA lysis reagent (R0010, Solarbio). After quantification with the BCA Protein Assay Kit, protein samples were separated on the SDS-PAGE gel and transferred onto PVDF membranes (IPVH00010, Millipore, USA). Membranes were incubated with primary antibodies, including Nfatc3 antibody (1:1000 dilution; 18222-1-AP, Proteintech), Pou3f1 antibody (1:1000 dilution; A19330, ABclonal), iNOS antibody (1:1000 dilution; A0312, Abclonal), COX-2 antibody (1:1000 dilution; A1253, Abclonal) and GAPDH antibody (1:10000 dilution; 60004-1-Ig, Proteintech). The Goat anti-Rabbit IgG/HRP antibody (1:3000 dilution; SE134, Solarbio) and Goat anti-Mouse IgG/HRP antibody (1:3000 dilution; SE131, Solarbio) were used as secondary antibodies. The protein signals were visualized using the ECL Western Blot Substrate (PE0010, Solarbio).
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5

Cardiac Protein Extraction and Analysis

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The heart tissues were lysed with RIPA buffer (Millipore, Bedford, MA, USA) for total protein extraction. Nuclear proteins were extracted using a nuclear protein extraction kit (Beyotime, Shanghai, China). The protein concentration was determined using the BCA protein assay kit (Millipore, Bedford, MA, USA) according to the manufacturer's protocol. Equal amounts of protein (30 μg) were subjected to SDS-PAGE for electrophoresis, transferred to 0.45 μm PVDF membranes (Millipore, Bedford, MA, USA), and immunoblotted with antibodies. The bands were quantified using the ImageJ software program (National Institutes of Health, Bethesda, MD, USA). The antibodies are listed in Table S1.
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6

Western Blot Analysis of Oxidative Stress Markers

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Cell and tissue lysate homogenates were prepared as previously described [25 (link)]. Nuclear extracts were prepared using a nuclear extraction kit (Sigma-Aldrich, MO, USA). After quantification with the BCA Protein Assay Kit, equal amounts of protein samples (40 μg) were separated by 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred to a polyvinylidene fluoride membrane (Millipore, MA, USA). After being blocked in TBST buffer (50 mM Tris, 150 mM NaCl, 0.1% Tween 20, pH 7.6) containing 5% skim milk for 2 h at room temperature, the membranes were incubated with appropriate primary antibodies against SIRT1 (1 : 1000), Nrf2 (1 : 1000), NQO-1 (1 : 1000), HO-1 (1 : 1000), gp91phox (1 : 500), Bax (1 : 1000), Bcl-2 (1 : 1000), cytosolic cytochrome c (1 : 1000), cleaved caspase 3 (1 : 1000), histone H3 (1 : 1000), and β-actin (1 : 1000) overnight at 4°C. Then membranes were washed in TBST and reacted with a secondary horseradish peroxidase-conjugated antibody (1 : 5000) for 1.5 h at 37°C. Antigen-antibody complexes were then visualized using enhanced chemiluminescence reagents. The density of the immunoreactive bands was analyzed using Image Lab software (Bio-Rad Laboratories, CA, USA).
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7

Protein Expression Analysis in PDAC Cells

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Total protein from human PDAC cells was extracted by protein lysis buffer (Invitrogen) containing 2 μL protease inhibitor, according to the instruction. Protein concentration was determined by a BCA Protein assay kit (Millipore, Darmstadt, Germany). 30 mg of protein in each sample was separated by polyacrylamide gel electrophoresis via 10% separating gel and transferred to 0.22 µm PVDF membranes (Millipore). Then, membranes were blocked with 5% nonfat milk for 2 h at 37°C and followed incubated with anti-MMP-2 (no. sc-13594; 1 : 1000; Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-MMP-9 (no. sc-393859; 1 : 750; Santa Cruz Biotechnology), anti-N-cadherin (no. sc-59987; 1 : 1500; Santa Cruz Biotechnology), anti-E-cadherin (no. sc-8426; 1 : 2000; Santa Cruz Biotechnology), anti-Vimentin (no. sc-6260; 1 : 1000; Santa Cruz Biotechnology), anti-Snail (no. sc-271977; 1 : 500; Santa Cruz Biotechnology), and GAPDH (no. sc-47724; 1 : 5000; Santa Cruz Biotechnology) antibodies overnight at 4°C. Goat anti-mouse horseradish peroxidase-conjugated IgG (no. sc-2005; 1 : 2500; Santa Cruz Biotechnology) was used as the secondary antibody and incubated with the membranes for 1 h at 37°C. Finally, protein bands were observed using the enhanced chemiluminescence kit (Millipore) on Chemidoc XRS Gel Imaging System (Bio-Rad, Hercules, CA, USA).
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8

Quantifying Protein and Hormone Levels

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Protein content in lysis samples was measured with BCA protein assay kit (Cat no. 71285-3, Millipore) according to the manufacturer’s instructions. Hormone contents of lysis and secretion samples were measured by well-characterized in-house radioimmunoassays (RIAs), in-house sandwich ELISA or validated commercially available ELISA. Samples were diluted in the respective assay buffers so that all positive measurements were within the sensitive part of the standard curves. Information regarding assay type (RIA or ELISA), antibody codes, epitopes, sensitivity, specificity and linear range for the assays is provided in supplementary table 1.
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9

Insulin Secretion Assay in Differentiated Cells

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Differentiated cells were pre-incubated for 2h at 37°C in Krebs-Ringer bicarbonate HEPES buffer (KRBH:116 mM NaCl, 4.7 mM KCl, 2.5 mM CaCl2, 1.2 mM KH2PO4, 1.2 mM MgSO4, 24 mM HEPES, 25 mM NaHCO3, and 0.1% BSA). Then, the cells were incubated for 1h at 37°C in KRBH containing the 2.5 mM D-glucose or 27.5 mM D-glucose or 30 mM potassium chloride (KCl). The human insulin levels in culture supernatants were measured with a Human Insulin ELISA kit (Millipore) according to the manufacturer's instructions. The total protein content was determined with a BCA Protein Assay Kit (Millipore) and served as internal control between groups.
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10

BCA Protein Quantification Assay

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The protein contents were assayed using the BCA Protein Assay Kit (Millipore, Molsheim, France, 71285-M). The BCA protein assay is a biuret-based reaction. The reduction of Cu2+ to Cu+ in the presence of proteins in an alkaline environment is related to the protein concentration. The chromogenic reagent bicinchoninic acid chelates the reduced copper and turns into a purple complex that absorbs at 562 nm.
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