The largest database of trusted experimental protocols

397 protocols using anti bcl 2

1

Protein Extraction and Western Blot Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein extraction and western blot analysis were performed as previously described [39 (link)].
Cells were harvested for protein extraction 48h after transfection. Lysates from transfected cells were collected using RIPA buffer (Sigma R0278, St Louis, MO, USA). Protein lysates were separated on SDS-polyacrylamide gels, electroblotted onto polyvinylidene difluoride membrane and immunoblotted with primary antibodies, then with peroxidase-conjugated secondary antibodies. After three additional washes, the immune complex was detected by ECL detection (Thermo 34077; Rockford, IL, USA). The following antibodies were used: anti-Cyclin A2 (1540-1, Epitomics, Burlingame, CA, USA), anti-Cyclin B1(1495-1, Epitomics), anti-Cyclin D1(1677-1, Epitomics), anti-Cyclin E(4129;Cell Signaling Technology, Beverly, MA, USA), anti-Bcl-2 (1017-1, Epitomics), anti-PUMA(1652-1, Epitomics), anti-mdm2 (556353, BD PharMingen, San Diego, CA, USA), anti-Caspase-3 (1087-1, Epitomics), anti-p21(2990-1, Epitomics), anti-PARP-1 (1072-1, Epitomics), anti-Bax (1063-1, Epitomics), anti-β-actin (60008-1-Ig, Protein Tech, Chicago, IL, USA), goat anti-mouse IgG-HRP (sc-2005, Santa Cruz Biotechnology, Dallas, Texas) and goat anti-rabbit IgG-HRP (sc-2004, Santa Cruz Biotechnology).
+ Open protocol
+ Expand
2

Molecular Mechanisms of Pancreatic Cancer Progression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Whole Pancreatic cancer cells were lysed on ice in a lysis buffer (RIPA, Beyotime, Shanghai, China) with a protease inhibitor mixture cocktail (Roche, Switzerland) after culturing in MRC-5-CM for 14 days. Western-blot analysis was performed by established protocols 43 (link). Anti-CTNNA1 and CTNNB1, anti-E-cadherin, anti-N-cadherin, anti-ZEB-1, ZEB-2, Snail, Slug and anti-vimentin primary antibodies were purchased from (Abcam); anti-MMP-2, 3, 13 and 21, anti-WNT-2, anti-WNT16, anti-TGFB1, anti-Src, P-Src-Y418 and P-Src-Y529 primary antibodies were purchased from (Epitomics); anti-Bcl-2, Bcl-xl, Bad, Bax, Bim, Bid, Caspase-3 and anti-β-actin were from ( Cell Signaling Technology).
+ Open protocol
+ Expand
3

Protein Expression Analysis in Paclitaxel-Treated Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were harvested at various times after paclitaxel treatment and disrupted in lysis buffer (1% Triton X-100, 1 mM ethyleneglycol-bis(2-aminoethyl ether)-N,N,N′,N′tetraacetic acid (EGTA), 1 mM EDTA, 10 mM Tris-HCl, pH 7.4, and protease inhibitors). Cell debris was removed by centrifugation at 10,000g for 10 min at 4°C. The resulting supernatants were resolved using sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred onto nitrocellulose membranes. The membranes were blocked with 5% non-fat dried milk at room temperature for 30 min and incubated with anti-TWIST (Bio Matrix Research, Japan), anti-phospho Akt (Cell Signaling Technology, Inc.), anti-Bcl-2 (Epitomics, USA), and anti-GAPDH. The membranes were then washed and incubated with horseradish peroxidase-conjugated secondary antibody. Signals were visualized using enhanced chemiluminescence (Amersham, UK). All western blot densitometry data were normalized for the loading control GAPDH by CS Analyzer.
+ Open protocol
+ Expand
4

Extracellular Vesicle Protein Profiling

Check if the same lab product or an alternative is used in the 5 most similar protocols
eEV and eEV-IL-3 were lysed in lysis buffer (RIPA buffer with proteinase inhibitors). Starting from the same EV particle number, protein samples were quantified by the Bradford method before performing Western blot (50 µg proteins/each sample were loaded). Anti-CD63, anti-CD81, antiHSP90, anti-GM130, anti-Bcl-2 (Abcam, Milan, Italy), anti-MEK1/2, (Cell Signaling, Danvers, MA, USA), anti-CD29, anti-caveolin-1, anti-p-eNOS-ser1177 (Invitrogen, Carlsbad, CA, USA), and anti-vinculin (Millipore, Milan, Italy) antibodies were used as primary antibodies. Appropriate HRP-conjugated secondary antibodies (BioRad, Milan, Italy) were used, and proteins were detected with Clarity Western ECL substrate (BioRad, Milan, Italy). Image Lab Software (BioRad Milan, Italy) instrument was used for densitometric analysis. Data are expressed as arbitrary unit. Ponceaus-staining has been used as input (EV protein content normalization).
+ Open protocol
+ Expand
5

Western Blot Analysis of Apoptosis Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein samples were separated on 10% sodium dodecyl sulphate–polyacrylamide gel electrophoresis (SDS-PAGE) and then transferred to polyvinylidene fluoride membranes (PVDF) (Millipore, Billerica, MA) for protein bands detection. The membranes were blocked in 5% nonfat milk. Primary antibodies including anti-GAPDH (1:2000, Abmart, Shanghai, CHN), anti-BCL2 (1:500, Abcam, Cambridge, UK), anti-Caspase 9 (1:1000, Cell Signaling Techonolgy, MA, USA), anti-cleaved-Caspase 9 (1:500, Cell Signaling Techonolgy, MA, USA), anti-Caspase 3 (1:1000, Abcam, Cambridge, UK), and anti-cleaved-Caspase 3 (1:1000, Abcam, Cambridge, UK) were used for incubation overnight at 4 °C. The membranes were incubated with HRP-conjugated secondary antibody (1:3000, Jackson Immuno Research, PA, USA) at room temperature for 1 h and the protein bands were detected by Pierce Fast Western Blot Kit (Thermo Fisher Scientific, MA, USA).
+ Open protocol
+ Expand
6

Protein Expression Analysis via Western Blot

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were disrupted by lysis buffer and protein content was determined using the BCA Protein Assay Kit. The quantified protein samples were then separated by SDS-PAGE and transferred to PVDF membranes, followed by sealing with 5% skim milk for 1 hour at room temperature. The PVDF membranes carrying the samples were incubated with primary antibodies overnight at 4°C, and then with secondary antibody for 2 h at room temperature. The signal was displayed with an enhanced chemiluminescence (ECL) kit (Thermo Fisher Scientific, Inc.). And, the protein expression levels were semi-quantified using Image-Pro Plus version 6.0 (Media Cybernetics, Inc.) software. The antibodies used in this study were purchased from Abcam and were used at the following concentrations: anti-Bcl-2 (1:1000), anti-Bax (1:1000), anti-cleaved caspase3 (1:100), anti-caspase3 (1:500), anti-PDE3B (1:2000), anti-p-AMPK (1:1000), anti-AMPK (1:1000), anti-p-mTOR (1:1000), anti-mTOR (1:10,000), anti-GAPDH (1:2500), and goat anti-rabbit IgG H&L (HRP) (1:2000).
+ Open protocol
+ Expand
7

Apoptosis Protein Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The proteins were extracted from the cells using RIPA lysis buffer (Thermo Fisher Scientific, Inc.) and their concentration levels were quantified using a bicinchoninic acid protein assay kit (Beyotime Institute of Biotechnology). The proteins (40 µg per lane) were separated by SDS-PAGE on 10% gels, and were transferred onto 0.45 µm PVDF membranes (Thermo Fisher Scientific, Inc.). Following blocking with 5% non-fat milk at room temperature for 1 h, the membranes were incubated with primary antibodies overnight at 4°C. The following primary antibodies were used: Anti-Bax (Abcam; cat. no. ab32503; 1:1,000), anti-Bcl-2 (Abcam; cat. no. ab32124; 1:1,000), anti-cleaved caspase 3 (Abcam; cat. no. ab2302; 1:1,000), anti-cytochrome c (Cyto C; Abcam; cat. no. ab13575; 1:1,000), anti-apoptotic protease activating factor-1 (Apaf 1; Abcam; cat. no. ab2001; 1:1,000), anti-cleaved caspase 9 (Abcam; cat. no. ab2324; 1:1,000) and anti-β-actin (Abcam; cat. no. ab8227; 1:1,000). Subsequently, the membranes were incubated with horseradish peroxidase-conjugated secondary antibody (Abcam; cat. no. ab150077; 1:200) for 1 h at room temperature. Finally, an image of the protein band was detected using ECL reagent (Santa Cruz Biotechnology, Inc.). Image-Pro Plus software (version 7, Media Cybernetics, Inc.) was used for the targets that were normalized to β-actin.
+ Open protocol
+ Expand
8

Western Blot Analysis of PDGFRA, BCL-2, and Caspase-3

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were collected 48 h after transfection and prepared for lysis in radioimmunoprecipitation assay buffer (BioVision, Inc.). Protein concentration was determined via a bicinchoninic acid assay. Protein (50 µg/lane) was separated via 8% SDS-PAGE. Separated proteins were transferred to polyvinylidene fluoride membranes (EMD Millipore). The membranes were blocked with 5% fat-free milk powder for 2 h at room temperature, and then incubated with primary antibodies against PDGFRA (1:1,000; Santa Cruz Biotechnology, Inc., cat. no. sc-338), anti-BCL-2 (1:1,000; Abcam, cat. no. ab59348), anti-Caspase-3 (1:500; Abcam, cat. no. ab13847) and β-actin antibody (1:1,000; Santa Cruz Biotechnology, Inc., cat. no. sc-47778) at 4°C overnight. Subsequently, the membranes were incubated with horseradish peroxidase-conjugated antimouse IgG (H+L) (1:10,000; Invitrogen; Thermo Fisher Scientific, Inc., cat. no. 62-6520) or anti-rabbit IgG (1:5,000; Invitrogen; Thermo Fisher Scientific, Inc., cat. no. 65-6122) antibody for 1 h at room temperature. The membranes were developed utilizing an ECL kit (Pierce; Thermo Fisher Scientific, Inc.) and visualized with X-ray film. Protein expression levels were standardized to those of β-actin. Data was analyzed by Quantity One version 4.62 software (Bio-Rad Laboratories, Inc.).
+ Open protocol
+ Expand
9

Comprehensive Protein Expression Profiling of Extracellular Vesicles

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein extracts were boiled in RIPA buffer (Beyotime) and separated by sodium dodecyl sulfate–polyacrylamide electrophoresis gel electrophoresis (SDS‐PAGE). The proteins were then transferred to polyvinylidene fluoride membranes (Millipore) and probed with anti‐CD9, anti‐CD63, anti‐ALIX, anti‐TSG101, anti‐EGFR, anti‐FXR1, anti‐TLR‐4, anti‐MMP2, anti‐TGF‐β1, anti‐phospho‐STAT5, anti‐STAT5, anti‐phospho‐ERK1/2, anti‐ERK1/2, anti‐phospho‐AKT, anti‐AKT, anti‐Ki‐67, anti‐PTEN (Abcam), anti‐Bcl‐2, anti‐Bax, anti‐E‐Cadherin, anti‐Vimentin, and anti‐GAPDH antibodies (Cell Signaling Technology). Electrochemiluminescence (Millipore) was applied to determine protein expression levels.
+ Open protocol
+ Expand
10

Apoptotic Effects of AEE Crystal

Check if the same lab product or an alternative is used in the 5 most similar protocols
AEE transparent crystal with the purity of 99.5% by RE-HPLC was prepared in Lanzhou Institute of Husbandry and Pharmaceutical Sciences of CAAS. H2O2 solution (cat number: 323381), dimethyl sulfoxide (DMSO), reactive oxygen species assay kit, and trypsin-EDTA were supplied by Sigma (St. Louis, MO). Cell Counting Kit-8 (CCK-8) was from MedChemExpress (NJ, USA), DMEM/F12 (1 : 1), and fetal bovine serum was from Gibco (NY, USA). LysoTracker Red probe, Hoechst 33342 staining solution, cellular glutathione peroxidase assay kit, Cu/Zn-SOD and Mn-SOD assay kit, and mitochondrial membrane potential assay kit were purchased from Beyotime (Shanghai, China). MitoTracker Red CMXRos probe was from Thermo Scientific (MA, USA). Anti-Bid cleavage site, Anti-Bax, Anti-Bcl2, Anti-Bcl-XL, anti-Caspase3 (Cas3), anti-cytochrome C, and anti-Cathepsin D (CTSD) were purchased from Abcam (MA, USA) and the CTSD activity assay kit was from BioVision (CA, USA). An Annexin V/FITC apoptosis detection kit was from BD Biosciences (NY, USA). A Caspase-3 activity assay kit was from Cell Signaling Technology (MA, USA).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!