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11 protocols using «novobiocin»

1

Isolation and Identification of E. albertii from Fish

2025
Single ichthyic isolate of E. albertii (Ea_FM1) was recovered from fresh fish meat sample collected from Laitumkhrah market of Meghalaya as part of routine surveillance work of food samples in the laboratory (Institutional Animal Ethics Committee clearance no. V-11011(13)/12/2023-CPCSEA-DADF dated December 5, 2023). The sample (25 g) was enriched in novobiocin (HiMedia, Mumbai, India) supplemented modified EC broth (HiMedia, Mumbai, India) incubated at 42°C for 24 h (Arai et al., 2021 (link)) followed by plating onto modified Xylose-Rhamnose-Melibiose MacConkey (XRM-MacConkey) agar (MacConkey agar base; D-xylose [HiMedia, Mumbai, India]; L-rhamnose [Sisco Research Laboratories, Mumbai, India]; D-(+)-Melibiose [Sigma-Aldrich, MA, USA]) incubated at 37°C for 48 h (Hinenoya et al., 2020 (link)). Colorless colonies were later confirmed with the help of combination of conventional PCRs targeting a 393 bp region of DNA binding transcriptional activator of cysteine biosynthesis gene (Lindsey et al., 2017 (link)) and a 449 bp region of E. albertii specific cytolethal distending toxin (Eacdt) gene (Hinenoya et al., 2019 (link)).
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2

Salmonella Detection in Red Deer Feces

2022
In this study, a total of 240 fecal samples, including 20 samples per month, were collected from freeranging wild red deer (Cervus elaphus) in an area of 100 hectares in Bahçeköy Deer Breeding Farm, under the body of the General Directorate of Nature Conservation and National Parks of the Ministry of Agriculture and Forestry in Istanbul Belgrad Forests between April 2019 and March 2020 for the isolation and identification of Salmonella. Fresh fecal samples collected every month regularly from different regions of a 100-hectare land were taken into sterile dry vessels containing feces and delivered to the laboratory as soon as possible within cold chain (Carroll et al., 2015) .
Among the samples, isolation of Salmonella species were performed according to the Protocol of the World Health Organization on Salmonella spp. isolation from Food and Animal feces (WHO 2010). The samples delivered to the laboratory were incubated for 18-20 hours at 37°C in Buffered Peptone Water for pre-enrichment. After the pre-enrichment process, cultures were passaged into Tetrathionate Broth (Oxoid) and Rappaport-Vassiliadis Soya Broth (Hi-Media) for selective enrichment and incubated for 18-24 hours at 37°C and 41.5°C, respectively. Hektoen Enteric Agar (Condalab) including novobiocin (15 μg/ml final concentration) and MacConkey Agar (Hi-Media) were used for the selective agar for isolation (Cakin et al., 2020) . Black colonies on Hektoen Enteric Agar and lactose-negative semitransparent yellowish colonies on MacConkey Agar were passaged to obtain pure cultures. As a result of the biochemical tests performed from the pure cultures, the isolates which were urease negative and methyl red, citrate positive, and formed H2S and gas in Triple Sugar Iron Agar, were evaluated as presumptive Salmonella spp. These isolates were examined by PCR by using Salmonella spp.-specific invA gene region primer-139 (5'GTG AAA TTA TCG CCA CGT TCG GGC AA3') and primer-141 (5'TCA TCG CAC CGT CAA AGG ACC C3') (Rahn et al., 1992) .
As a positive control, Salmonella Typhimurium ATCC 14028, from the culture collection of Department of Microbiology, Faculty of Veterinary Medicine, Istanbul University-Cerrahpaşa, was used. Salmonella spp.-specific gene region was sought in the electrophoresis that was conducted after the DNA extraction and DNA amplification procedures.
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Corresponding organizations : Istanbul University-Cerrahpaşa

3

Antibiotic Susceptibility of Brucella Isolates

2022
The brucells isolates were tested for their susceptibility to 11 antibiotics (Rifampicin; Ciprofloxacin; Ampicillin; Erythromycin; Novobiocin; Kanamycin; Gentamicin; Streptomycin; Tetracycline; Doxycycline and Carbenicillin), obtained from Himedia Laboratories. Testing was performed on Mueller-Hinton Agar plates using the Kirby-Bauer disk diffusion technique (Bauer & Kirby, 1966 (link)). The antibiotic resistance of each brucella isolate was determined based on the breakpoints of the inhibition zone diameters for individual antibiotic agents and as recommended by the disk manufacturer.
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Corresponding organizations : Thamar University, Al-Ahliyya Amman University

4

Antimicrobial Susceptibility Testing

2021
The following materials, chemicals, solvents, and drugs were used: Paper Disc (Advantec, India), Disk Diffusion Zone (Inhibitor) measuring ruler (Himedia, Chennai, India), Ethanol, Methanol (Fisher Scientific, Chennai, India), 96% Ethanol (Fisher Scientific, Gangnam, Seoul, South Korea), Mueller–Hinton Agar (Himedia, Chennai, India), Nutrient Broth (Himedia, Chennai, India), Mannitol salt agar (Himedia, Chennai, India), Triptic soy agar Phosphate buffer Saline (Fisher Scientific, Chennai, India), Antibiotics (ampicillin, vancomycin, penicillin, gentamicin, tetracycline, kanamycin, clindamycin, erythromycin, and novobiocin (Himedia, Chennai, India).
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Corresponding organizations : Bharath University, Kangwon National University, Bharathidasan University, Aligarh Muslim University, University of Management and Technology

5

Antibiotic Susceptibility Profiling of Bacterial Isolates

2021
The following ten commonly-prescribed antibiotics (HiMedia, India) were used for antimicrobial susceptibility testing: ampicillin (AMP, 10 mg), chloramphenicol (C, 30 mg), ceftriaxone (CTR, 30 mg), ciprofloxacin (CIP, 30 mg), doxycycline (DO, 30 mg), meropenem (MEM, 10 mg), novobiocin (NV, 30 mg), streptomycin (S, 10 mg), tetracycline (TE, 30 mg), and vancomycin (VA, 30 mg). For each culture suspension of the bacterial isolates, a McFarland 0.5 standard was maintained [26 ]. Antibiogram phenotyping was performed using the disk diffusion method in Mueller Hinton agar media (HiMedia, India). Results were recorded as sensitive, intermediate, or resistant in accordance with the CLSI recommendations [27 ].
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Corresponding organizations : Bangladesh Agricultural University, Uppsala University, University of South Florida St. Petersburg

Top 5 most cited protocols using «novobiocin»

1

Antibiotic Susceptibility of Mutant P. pentosaceus

The mutant of P. pentosaceus was tested for susceptibility to twenty seven antibiotics using agar disc diffusion test (Barry and Thornsberry 1980 ). The antibiotic tests were performed using commercially available antibiotic octodiscs containing Amoxyclav (Ac), Cephalexin (Cp), Ciprofloxacin (Cf), Clindamycin (Cd), Erythromycin (E), Ampicillin (A), Carbenicillin (Cb), Cephotaxime (Ce), Chloramphenicol (C), Co-Trimazine (Cm), Oxacillin (Ox), Amikacin (Ak), Amoxycillin (Am), Bacitracin (B), Cephalothin (Ch), Novobiocin (Nv), OxyTetracycline (O), Vancomycin (Va), Cephaloridine (Cr), Kanamycin (K), Lincomycin (L), Methicillin (M), Norfloxacin (Nx), Olaendomycin (Ol), PenicillinG (P), Tetracycline (T) and Gentamicin (G), from Hi-media Pvt. Ltd. India. MRS medium containing 2% glucose as carbohydrate source with 1.8% (w/v) agar and 0.8% (w/v) agar were used. The petri-plates were first prepared with MRS medium containing 1.8% (w/v) agar. The test strain was seeded in MRS-soft agar (0.8%, w/v) and overlaid in the Petri-plate having a bottom layer of above MRS agar (1.8%, w/v). The octodiscs were then gently placed over the surface of the seeded plate. The Petri plates were incubated in inverted position overnight in an incubator at 28 °C and were observed next day for zone of inhibition around the discs.
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Corresponding organizations : Indian Institute of Technology Guwahati, Lovely Professional University

2

Antibiotic Sensitivity and β-Lactamase Assay

Antibiotic sensitivity of test strains was determined by the standard Disc diffusion method against Ampicillin (A10) Penicillin (P 30) Norfloxin (N30) Vancomycin (Va30) Chloramphenicol (C30) Novobiocin (Nv 30) and Carbenicillin (Cb100) Antibiotic discs were purchased from Hi-Media Pvt. Ltd. (Mumbai, India). β-Lactamase assays: Crude β-lactamase extracts were prepared from 5 mL of overnight cultures. Bacterial cells containing β-lactamase were grown to mid-log phase (optical density at 540 nm: 0.5) in LB broth containing 100 mg of ampicillin mL -1 . The cells were pelleted, washed and resuspended in 500 mL of 50 mM Tris-HCl buffer, pH 7.4. A 40 mg mL -1 stock solution of freshly prepared lysozyme in Tris-HCl buffer was added to a final concentration of 10 mg mL -1 and bacterial cells were incubated for 15 min at room temperature. EDTA was added to a final concentration of 1 mM and the mixture was gently shaken for 10 min. The cell suspension was clarified by centrifugation at 14,000 g for 15 min and the supernatant was collected. β-Lactamase activity in the supernatant was measured with the chromogenic cephalosporin nitrocefin The amount of protein in each β-lactamase preparation was determined by Lowry et al. [17] . The specific activity present in each sample was estimated by measuring the hydrolysis of 100 mM nitrocefin at 25°C in a spectrophotometer at 482 nm. Specific activity was defined as U mg -1 of protein. One unit was defined as the amount of nitrocefin hydrolyzed (micromolar) min -1 .
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Corresponding organizations : University of Madras

3

Microbiological detection of foodborne pathogens


E. coli O157:H7 was detected using the reference method described in International Organization for Standardization (ISO 16654:2001). In brief, 25 g of each sample was diluted in 225 mL of modified tryptone soya broth (TSB; Oxoid) added with novobiocin, homogenized for 2 min and incubated for 24 h at 41.5 °C. After enrichment, the selective and differential isolation of E. coli O157:H7 was streaked onto Tellurite cefixime sorbitol macconkey agar (TC-SMAC) (Oxoid).
Detection of Salmonella sp. was carried out as per ISO 6579:2000 reference method. In brief, 1 and 0.1 mL of homogenate BPW were inoculated into tetrathionate (TT) broth with novobiocin (Himedia) and Rappaport–Vassiliadis (RV) broth (Himedia), respectively. The enriched broth was incubated for 24 ± 2 h, respectively, at 37 ± 1 °C (for TT broth) and 42 ± 1 °C (for RV broth). The positive cultures were streaked onto XLD Salmonella agar (Himedia) at 37 ± 1 °C for 24 h and confirmed using the API 20E kit (Biomerieux) (Seow et al. 2012 (link); Sospedra et al. 2013 (link)).
L. monocytogenes was detected as per ISO 11290-1 (1996 ). 25-g samples were weighed into sterile nylon bags and homogenized with 225 mL of Fraser broth (Himedia). After homogenizing and pre-culturing at 37 ± 1 °C for 48 ± 2 h, the positive broth was streaked onto Listeria Palcam agar (Himedia) and incubated at 37 ± 1 °C for 24 ± 2 h. Characteristic colonies were Gram stained and tested for motility, oxidase and catalase activity followed by identification with the API Listeria system (Biomerieux, Marcy I’Etoile, France).
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Corresponding organizations : Indian Institute of Technology Dhanbad

4

Hemolytic Activity and Antibiotic Susceptibility of LAB

We assessed the hemolytic activities of LAB strains showing antagonistic activity during initial screening by the presence of α/α (a small zone of greenish-brownish discoloration of the medium, indicating reduction of hemoglobin to methemoglobin), β/β (clear, colorless or light yellow zone surrounding the colonies depicting total lysis of red blood cells), and γ/γ (with no change observed in the medium) hemolysis following the protocol of Maragkoudakis et al. (2006) (link). In the antibiotic susceptibility test, we examined promising screened and characterized LAB isolates using the agar disc diffusion method (Bauer et al., 1966) (link). Twelve antibiotics were tested (Hi-Media): penicillin G (2 units), ceftriaxone (30 µg), ampicillin (25 µg), vancomycin (30 µg), oxacillin (1 µg), streptomycin (10 µg), chloramphenicol (30 µg), gentamicin (10 µg), erythromycin (10 µg), tetracycline (10 µg), novobiocin (30 µg), and ciprofloxacin (10 µg). Isolates were categorized as sensitive (≥21 mm), intermediate (16-20 mm), or resistant (≤15 mm) (Liasi et al., 2009) . The multiple antibiotics resistance (MAR) index was determined for each probiotic strain as previously described by Ngwai et al. (2011) .
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5

Isolation of Salmonella from Samples

For isolation of Salmonella, standard bacteriological procedures were followed. Briefly, after the pre‐enrichment of the pooled samples in buffered peptone water (Oxoid Ltd.), it was inoculated on Modified Semi‐solid Rappaport‐Vassiliadis (MSRV) medium (Himedia Ltd.) supplemented with novobiocin (HiMedia Ltd.) and incubated at 41.5°C for 24–36 h. Later, inoculum from any swarming growth observed on the MSRV plates was transferred to brilliant‐green agar (Oxoid Ltd.) and incubated overnight at 37°C to obtain isolated colonies. Suspected Salmonella colonies were cultured onto blood agar and stored at −80°C for further examination.
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Corresponding organizations : Chattogram Veterinary and Animal Sciences University

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