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4 protocols using as01 004

1

Antibody Production and Immunoblotting Assays

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Peptides corresponding to amino acids 900 to 917 (HYPPQTPLNSLLQEQNPG) of FtsHi1 and amino acids 798 to 816 (MCYERAKEILGRNRTLMDE) of FtsHi2 were synthesized and used as antigens to raise antibodies in rabbits. Total Arabidopsis seedling proteins were extracted from ground tissue powder using a protein extraction buffer (300 mM Tris-HCl pH 8.45, 8% SDS, 1 mM EDTA, and protease inhibitors [cOmplete™, Roche]). Samples were dissolved in 1× SDS-PAGE sample buffer. For immunoblotting assays, samples were analyzed by SDS-PAGE, blotted onto PVDF or nitrocellulose membranes, blocked by 5% BSA in 0.1% (v/v) Tween 20, 20 mM Tris-HCl pH 7.4 and 150 mM NaCl, and hybridized with various primary antibodies. Recombinant RBCS was purified from E. coli as described previously (39 (link)) and used to raise antibodies in rabbits. Sources of antibodies were Arabidopsis Toc75 POTRA domains (40 (link)), Arabidopsis Tic110 and Toc159 M domain (41 (link)), Hsp93 (42 (link)), CAB (Agrisera AS01 004), cpHsc70 (Agrisera AS08 348), GS2 (Agrisera AS08 296), and Myc [Santa Cruz, Myc(9E10): sc-40].
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2

Immunoblotting Analysis of Leaf Proteins

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Proteins were extracted from 500 mg of whole primary foliage leaves with a double volume (1 ml) of sample buffer [62.5 mM Tris–HCl, pH 6.8, 10% (v/v) glycerol, 1% (w/v) SDS, 5% (v/v) ß-mercaptoethanol]. After heating the suspensions at 65 °C for 5 min, cellular debris was removed by centrifugation. Equal amounts of protein (10 µg) were subjected to SDS–PAGE, and separated proteins were transferred to nitrocellulose membranes (Carl Roth, Roti-NC) by electroblotting (Humbeck et al., 1994 (link)). After incubation with the primary antibody, immunoreactive bands were visualized using a peroxidase-coupled secondary antiserum with chemiluminescence detection (ECL Select Amersham, Pierce Thermo Scientific Waltham, MA, USA; Ultra TMA-6 Lumigen, Southfield, MI, USA). Primary antibodies were directed towards HvWHIRLY1 (Grabowski et al., 2008 (link), 2nd peptide), LHCB1 (Agrisera AS01004), LHCB4 (Humbeck and Krupinska, 2003 (link)), D1 (Agrisera AS01016), LHCA1 (Agrisera AS01005), FNR (AntiProt F01A-1), Cu/ZnSOD (Agrisera AS06170), and an antibody directed towards PSI (kindly provided by Poul Eric Jensen, University of Copenhagen, Denmark).
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3

Evaluating Photosystem II Alterations in Tomato Plants

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The alterations in photosystem II were evaluated using an analysis of CP43, CP47, Lhcb1 and Lhcb2 polypeptides. Proteins of thylakoid membranes from the controls and treated tomato plants grown under different combinations of temperature and light intensity were analyzed in a Laemmli SDS–PAGE system. The polyacrylamide concentrations of the stacking and resolving gels were 4 and 12%, respectively, with 4 M urea added to the resolving gel. The samples were incubated with a sample buffer (3:1) in the dark for 1 h at room temperature. Equal volumes of thylakoid membranes, corresponding to 3 µg Chl were loaded in every line. The proteins were transferred from gel to nitrocellulose membranes, and proteins were probed with antibodies for CP43 (AS11 1787 at a dilution of 1:3000, Agrisera, Vännäs, Sweden), CP47 (AS04 038 at a dilution 1: 2000, Agrisera, Vännäs, Sweden), Lhcb1 (As01 004 at a dilution of 1:2000, Agrisera, Vännäs, Sweden) and Lhcb2 (AS01 003 at a dilution 1:5000, Agrisera, Vännäs, Sweden). The Alkaline Phosphatase Conjugate Substrate Kit (Bio-Rad, Hercules, CA, USA) with goat anti-rabbit (GAR) secondary antibodies was used for the development of the blocked membranes, which were quantified with ImageJ software. Immunoblotting was repeated 3 times with thylakoid membranes from two different experiments.
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4

Solubilization and Analysis of Thylakoid Protein Complexes

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To solubilize the thylakoid protein complexes from the thylakoid samples isolated with or without 5 mM MgCl2, the samples were diluted in BTH buffer [25 mM Bis/Tris/HCl (pH 7.0), 20% (w/v) glycerol, 0.25 mg/ml Pefabloc and 10 mM NaF]. An equal volume of 2% digitonin (Merck, Calbiochem) in BTH buffer was added to the sample to achieve a final concentration of 0.5 mg ml−1 of Chl and 1% digitonin in the sample and separated with BN-PAGE as described previously (Rantala et al. 2018b ). To investigate the distribution of Lhcb2 proteins in different pools of LHCII trimers, 2D-BN-BN-PAGE was performed as described in (Rantala et al. 2018a ). The 2D-BN gels were electroblotted to PVDF membranes and immunoprobed with pLhcb1 and pLhcb2 antibodies (Agrisera AS13 2704 and AS13 2705, 1:10,000 dilution in 1% BSA) and with Lhcb1, Lhcb2 and Lhcb3 antibodies (Agrisera AS01 004, AS01 003 and AS01 002). (1:2,000–1:5,000 dilution in 1% BSA).
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