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322 protocols using anti bax

1

Immunoprecipitation of p53 and Bax in VSMCs

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VSMCs transfected with sh-H19 or sh-NC were collected and rinsed with cold PBS and then lysed in IP Lysis Buffer (Thermo Fisher Scientific, Inc.), followed by centrifugation at 20,000 × g for 30 min at 4°C. Next, total protein was quantified using a BCA assay and the lysate containing 200 µg protein were incubated with Dynabeads® protein G for 1 h and incubated with 2 µg anti-p53 (cat. no. 9282; Cell Signaling Technology, Inc.) or anti-Bax (cat. no. ab216494; Abcam) antibodies overnight at 4°C, followed by incubation with Dynabeads® protein G for another 1 h. The whole cell lysate was incubated overnight at 4°C with 2 µg anti-rabbit IgG antibody (cat. no. 3900; Cell Signaling Technology, Inc.) as the negative control for the anti-p53 antibody or 2 µg anti-mouse IgG antibody (cat. no. ab6709; Abcam) as the negative control for the anti-Bax antibody. The immunocomplex were washed with IP Lysis Buffer and analyzed by the aforementioned western blot procedure using anti-Bax (1:1,000; cat. no. 2774; Cell Signaling Technology, Inc.) or anti-p53 (1:1,000; cat. no. 2524; Cell Signaling Technology, Inc.) antibodies.
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2

Whole Cell Lysate Immunoblotting Protocol

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Whole cell lysates were prepares using RIPA lysis buffer as described [20 (link)]. Total protein concentration was determined using Bradford Protein reagent (Bio-Rad). Soluble proteins were loaded on precast TGX gels and were analyzed by immunoblotting with anti-cytochrome c (1:200 Abcam), anti-PARP (1:200 BioVision), anti-Bax, anti-Bcl2, anti-BclxL, anti-Cyclin D1 (Dilution 1:1000; Santa Cruz Biotechnology) and anti-β-actin (1:10,000 Sigma). Reactivity was detected with horseradish peroxidase-conjugated secondary antibodies and chemiluminescence by Clarity Western ECL Substrate (Bio-Rad). Membrane was developed using C-Digit Blot Scanner (LI-COR, Hamburg Germany).
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3

Apoptosis Induction in Cancer Cells

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Phenolic acids, flavonoids, Folin & Ciocalteu’s phenol reagent, Trolox, 2,2′-azinobis (3-ethylbenzothiazoline 6-sulfonate) (ABTS), sodium bicarbonate, MTT dye [3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide], and propidium iodide (PI) were purchased from Sigma Chemical Co. (St. Louis, MO, USA). Dimethylsulfoxide (DMSO) was purchased from Merck Co. (Darmstadt, Germany). 2,2′-Azobis (2-amidinopropane) dihydrochloride (AAPH) was purchased from Wako Pure Chemicals (Osaka, Japan). Leibovitz’s L-15 medium, Ham’s F-12K medium, RPMI-1640 medium, minimum essential medium, fetal bovine serum, nonessential amino acids, sodium pyruvate, and an antibiotic mixture (penicillin–streptomycin) were purchased from Invitrogen Co. (Carlsbad, CA, USA). Anti-Fas, Anti-FasL, anti-p53, anti-Bax, anti-Bcl-2, anti-Bak, anti-Bad, anti-tBid, anti-caspase-8, anti-caspase-9, anti-caspase-3, anti-poly (ADP-ribose) polymerase (anti-PARP), and anti-β-actin antibodies; a caspase-3/CPP32 inhibitor (Z-DEVD-FMK); and a caspase-9/Mch6 inhibitor (Z-LEHD-FMK) were purchased from the BioVision (Mountain View, CA, USA). All other chemicals were reagent grade or better.
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4

Protein Extraction and Western Blot Analysis

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Protein extraction and western blot analysis were performed as previously described [39 (link)].
Cells were harvested for protein extraction 48h after transfection. Lysates from transfected cells were collected using RIPA buffer (Sigma R0278, St Louis, MO, USA). Protein lysates were separated on SDS-polyacrylamide gels, electroblotted onto polyvinylidene difluoride membrane and immunoblotted with primary antibodies, then with peroxidase-conjugated secondary antibodies. After three additional washes, the immune complex was detected by ECL detection (Thermo 34077; Rockford, IL, USA). The following antibodies were used: anti-Cyclin A2 (1540-1, Epitomics, Burlingame, CA, USA), anti-Cyclin B1(1495-1, Epitomics), anti-Cyclin D1(1677-1, Epitomics), anti-Cyclin E(4129;Cell Signaling Technology, Beverly, MA, USA), anti-Bcl-2 (1017-1, Epitomics), anti-PUMA(1652-1, Epitomics), anti-mdm2 (556353, BD PharMingen, San Diego, CA, USA), anti-Caspase-3 (1087-1, Epitomics), anti-p21(2990-1, Epitomics), anti-PARP-1 (1072-1, Epitomics), anti-Bax (1063-1, Epitomics), anti-β-actin (60008-1-Ig, Protein Tech, Chicago, IL, USA), goat anti-mouse IgG-HRP (sc-2005, Santa Cruz Biotechnology, Dallas, Texas) and goat anti-rabbit IgG-HRP (sc-2004, Santa Cruz Biotechnology).
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5

Immunohistochemical Analysis of Inflammatory Markers

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Histopathological analysis and immunohistochemistry were carried out as described [18] (link). Anti-p65 (Santa Cruz Biotechnology, Santa Cruz, CA, USA; 1∶200), anti-p-IKKα/β (Cell Signaling Technology, Danvers, MA, USA; 1∶100), anti-p-S6(S235/236) (Cell Signaling Technology; 1∶400), anti-AKT (Abcam, Cambridge, MA, USA; 1∶100), anti-p-AKT(S473) (Abcam; 1∶100); anti-Bax (Epitomics, Burlingame, CA, USA; 1∶300), anti-Ki67 (Bioss, Beijing, China; 1∶50), anti-IL-1β (Abzoom, Dallas, USA; 1∶200), anti-IL-6 (Sanying, Wuhan, China; 1∶300), and anti-TNF-α (Boster, Wuhan, China, 1∶150) were used in the immunohistochemical studies. Secondary antibody was diluted 1∶100 and applied for 2 h at room temperature. The Vectastain ABC Elite System (Vector Laboratories, Burlingame, CA) was used to visualize staining for IHC. The immunostained slides were observed under a microscope. Images were taken by a digital camera and semi-quantity of the signal was analyzed by counting mean density of the immunoreactivities against all primary antibodies. Brown or yellow was regarded as positive signal. Image data were analyzed with NIS-Elements AR 3.0 software (Nikon, Japan). Immune cell, apoptosis, and proliferation indices were generated by counting the number of positive cells per high-powered field (HPF; 40× objective) within each mouse [19] (link).
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6

Synovial Cell Protein Expression Analysis

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Aliquots of synovial cell lysates were separated with 12% sodium dodecyl sulfate–polyacrylamide gel electrophoresis, blotted onto a polyvinylidene difluoride membrane, and probed with primary antibodies (Abcam, Cambridge, UK) for 75 minutes at room temperature. The membranes were incubated with rabbit anti-actin Ab (Huaan Biotechnology, Hangzhou, People’s Republic of China), anti-TIPE2 (Abcam), anti-caspase-8 (p18) (Abcam), anti-DR5 antibodies (Abcam), antinuclear factor-kappa Bp (anti-NF-κBp) 105/p50 (phospho) (Abcam), anti-caspase-3 (pro) (Epitomics, Burlingame, CA, USA), anti-caspase-3 (active) (Epitomics), anti-caspase-9 (Epitomics), anti-Bid (Epitomics), and anti-Bax (Epitomics). The protein bands were visualized by electrochemiluminescence reactions. Immunoblot analysis was performed as previously described.16 (link)
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7

Investigating Apoptosis Pathway in GC-2spd Cells

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About 5 × 106 treated GC-2spd cells were lysed in 100 μL lysis buffer (20 mM Tris-HCl (pH 7.4), 10 mM EDTA, 2 mM EGTA, 250 mM sucrose, 0.1% Triton X-100, 1 mM phenyl-methylsulfonyl chloride, and 100 mM PMSF) and scraped from the plate to detect cytochrome c, procaspase-9, procas-pase-3, Bcl-2, Bax proteins. Each protein sample was measured by a DC protein assay (Bio-Rad, USA). Cells extracts were separated in SDS-polyacrylamide gel and transferred electrophoretically onto a PVDF membrane. The membranes were blocked in PBS containing 5% (w/v) nonfat dry milk and then incubated at 4°C overnight with anti-Bcl-2 (Cell Signaling Technology, USA), anti-Bax (Epitomics, China), anti-cytochrome c (Epitomics, China), anti-procaspase-9 (Santa Cruz Biotechnology, USA) and anti-procaspase-3 (Bioworld Technology, USA) at 1:1000 dilution. Then the membranes were incubated at 37°C for 2 h with the secondary antibody combined with horseradish peroxidase (1:5000 dilution, Amer-sham Pharacia, UK). Finally, the immune-reactive proteins were detected using an ECL western blotting detection system (Pierce Biotechnology, USA), and the densitometric analysis of immunoblots was performed with Gel pro 3.0 software.
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8

Gastrin Knockdown in BGC823 Cells

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Two stable clones of BGC823-Gastrin KD cells were selected and, respectively, named as PshrNa-A1and PshrNa-B3. BGC823-Ctrl cells and untreated BGC823 cells were taken as control. These cells were subjected to lysis (50 mmol/L Tris–Cl (pH 6.8), 100 mmol/L DTT, 2% SDS, and 10% glycerol). Equal amounts of protein (50 μg) were then separated on 12% SDS–PAGE and transferred to PVDF membrane (Pharmacia, (GE), USA). The membrane was blocked with 5% nonfat milk for 1 h and then incubated with the specific antibody: anti-gastrin (Abcam, Cambridge, MA, USA) (1 : 500), anti-IκB-α (Santa Cruz, CA, USA) (1 : 500), anti-p-IκB-α (Santa Cruz, CA, USA) (1 : 500), anti-NF-κB (Santa Cruz, CA, USA) (1 : 500), anti-Bcl-2 (US Biological, Boston, USA) (1 : 500), anti-Bax (Epitomics, Burlingame, CA, USA) (1 : 500), anti-COX17(Abcam, Cambridge, MA, USA) (1 : 500), anti-COX5B(Abcam, Cambridge, MA, USA) (1 : 500), anti-ATP5J(Abcam, Cambridge, MA, USA) (1 : 500), and anti-β-actin (Santa Cruz, CA, USA) (1 : 20000) overnight at 4°C. Horseradish peroxidase-conjugated secondary antibodies (Santa Cruz, CA, USA) were used at a 1 : 2000 concentration. Color development was performed with the ECL system (GE Health Care, Little Chalfont, Buckinghamshire, UK).
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9

Western Blot Analysis of Cardiac Proteins

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Total proteins from H9c2 cells and working heart tissues were extracted using RIPA lysis buffer, separated by electrophoresis on an SDS-polyacrylamide gel and transferred to a polyvinylidene difluoride (PVDF) membrane (Millipore, Billerica, MS, USA). The membrane was blocked with 5% nonfat milk in Tris-buffered saline/Tween 20 (TBST) and was incubated overnight with the following primary antibodies: anti-ox-CaMKIIδ (Met281/282) (1 : 1000, GeneTex), anti-p-CaMKIIδ (Thr286) (1 : 1000, Abcam), anti-CaMKIIα (1 : 10000, Abcam), anti-CaMKIIβ (1 : 500, Abcam), anti-CaMKIIδ (1 : 1000, Abcam), anti-CaMKIIγ (1 : 500, Abcam), anti-p-JNK1/2 (T183/Y185) (1 : 1000, CST), anti-JNK1/2 (1 : 1000, CST), anti-p-NF-κB p65 (Ser536) (1 : 1000, Abcam), anti-NF-κB p65 (1 : 1000, Abcam), anti-Bcl-2 (1 : 500, Abcam), anti-Bax (1 : 500, Abcam), anti-cytochrome c (1 : 1000, Abcam), and anti-GAPDH (1 : 1000, ZSGB-Bio, Beijing, China). The membrane was then washed and probed with horseradish peroxidase-conjugated goat anti-rabbit or anti-mouse antibody (1 : 8000, ZSGB-Bio) to enhance the chemiluminescence that was detected using a Fusion-FX6 imaging system (Vilber Lourmat, Marne-la-Valle, France).
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10

Cell Viability and Apoptosis Assay

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Phosphate-buffered saline (PBS, pH = 7.4) was purchased from Sangon Co, Ltd (China), 3-(4,5-dimethyl-2-thiazolyl)-2, 5-diphenyl-2-H-tetrazolium bromide (MTT), sodium dodecyl sulfate (SDS), polyacrylamide, bis-acrylamide, and TARMA were purchased from Sigma-Aldrich Co, Ltd (USA). Dulbecco’s modified Eagle’s medium (DMEM), fetal bovine serum (FBS), and penicillin-streptomycin solution were purchased from Invitrogen. Other chemicals were purchased from Sigma-Aldrich Co, Ltd. Anti-Bcl-2, anti-Bax, and anti-Caspase-3 proteins were purchased from Abcam Co. Ltd (Great Britain).
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