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251 protocols using ab92726

1

Comprehensive Characterization of Extracellular Vesicles

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For Nanosight nanoparticle tracking analysis (NTA), 20 μg EVs were dissolved in 1 mL PBS for 1 min to retain the uniform distribution of EVs. Then, EV particle size distribution was directly measured using a Nanosight nanoparticle tracking analyzer (Malvern Panalytical, UK).
For transmission electron microscopy (TEM), 20 μL ultracentrifuged EVs were loaded to carbon-coated copper electron microscope grids for 2 min, followed by negatively 5-min of staining with phosphotungstic acid solution (12501-23-4, Sigma-Aldrich). The grid was then washed with PBS three times to eliminate excess dye solution and kept semi-dry with filter paper. The images were observed using a TEM (H7650, Hitachi, Tokyo, Japan) at 80 kV.
The surface markers of EVs were identified using western blot. EV suspension was concentrated, and then, total protein concentration was examined using a bicinchoninic acid (BCA) assay kit (23227, Thermo Fisher Scientific). SDS-PAGE gel was prepared and protein denaturation and electrophoresis were performed. Afterward, the expressions of EV specific markers CD9 (ab92726, Abcam), CD81 (ab92726, Abcam), Alix (ab76608, Abcam), and calnexin (ab22595, Abcam) were detected.
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2

Isolation and Characterization of ADSC-Derived Exosomes

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Exosomes were purified from ADSCs as previously described [25 (link)]. In brief, the medium of ADSCs culture medium was centrifuged under 500×g for 10 min to remove cells and cell fragments were removed at 12,000×g for 20 min. After filtered by a 0.22-μm filter, ADSCs-conditioned medium was harvested. Then, the supernatant fluid was centrifuged at 100,000×g for 30 min to obtain a concentrated liquor of ADSCs-derived exosomes. After centrifugation at 100,000×g for 120 min, the lower liquid layer was diluted by PBS and then centrifuged at 1000×g for 30 min. After washing three times in PBS, the resulting exosomes pellets were resuspended in PBS and frozen at − 80 °C for the experiments. The exosomes were imaged by transmission electron microscopy (JEM-200EX TEM, Tokyo, Japan). For absolute size distribution analysis, the exosomes were diluted to 500 ng/ml and then analyzed by Nanoplus (Gerbrunn, Germany). The proteins in exosomes were analyzed by western blotting using antibody against CD9 (ab92726, Abcam), GM130 (sc71165, Santa Cruz), TSG101(ab83, Abcam).
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3

Exosome Isolation and Characterization

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Exosomes were precipitated by using an exosome precipitation solution (Exo-Quick; System Biosciences) following the manufacturer's instructions [19 (link)]. Ultrastructure and size distribution of the purified exosomes were analyzed by transmission electron microscopy (TEM) and NanoSight (Malvern), respectively. Protein markers, CD9 (Ab92726, Abcam, UK) and CD63 (Ab134045, Abcam, UK), were determined by immune blotting.
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4

Exosomal Protein Extraction and Analysis

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Total proteins were exacted from cells and exosomes using lysis buffer (Beyotime). The protein concentration was analyzed using a BCA Protein Assay Kit (Beyotime). Proteins were separated using SDS‐PAGE and then transferred onto PVDF membranes (Roche Applied Science). The membranes were blocked with 2% BSA (Sigma‐Aldrich), followed by incubation with the indicated primary Abs overnight at 4℃. Membranes were then incubated with HRP‐conjugated goat anti‐mouse or goat anti‐rabbit IgG for 2 hours at room temperature, and the immunoblots were visualized using an enhanced chemiluminescence kit (GE Healthcare). The following primary Abs were used: anti‐heparanase (sc‐25825; Santa Cruz Biotechnology), anti‐CD63 (ab134045, 1:1000; Abcam), anti‐CD9 (ab92726, 1:1000; Abcam), anti‐CD81 (ab219209, 1:1000; Abcam), anti‐Flotillin‐1 (ab133497, 1:10 000; Abcam), and anti‐β‐actin (Abcam).
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5

Exosome Identification via Western Blotting

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Exosome-specific markers, including positive (CD9, CD63, and TSG101) and negative markers (GRP94), were used to identify exosomes by western blotting. Total proteins (25 µg) in the extracted resuspension of exosomes were sequentially subjected to gel electrophoresis (10% SDS-PAGE), membrane transfer, blocking, incubation with primary antibodies specific for CD9, CD63, TSG101, and GRP94 (ab92726, ab134045, ab125011, ab238126, Abcam, Cambs, UK), incubation with the goat anti rabbit secondary antibodies, and enhanced chemiluminescence (ECL) to examine exosomal protein expression (22 (link), 23 (link)).
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6

Immunoblotting Protocol for Myelin Proteins

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Immunoblotting was performed as described (Patzig et al., 2016a (link); Schardt et al., 2009 (link)). Antibodies were specific for ANLN (Acris AP16165PU-N; 1:1000), SEPT2 (ProteinTech Group 11397–1-AP; 1:500), SEPT4 (IBL JP18987; 1:500), SEPT7 (IBL JP18991; 1:5000), SEPT8 (ProteinTech Group 11769–1-AP; 1:2500), MAG ((Erb et al., 2003 (link)); kindly provided by N. Schaeren-Wiemers, Basel; 1:500), PLP/DM20 (A431 ((Jung et al., 1996 (link)); 1:5000), cyclic nucleotide phosphodiesterase (CNP) (Sigma C5922; 1:1000), MOG (clone 8–18 C5 (Linnington et al., 1984 (link)); 1:5000; kindly provided by C. Linington, Glasgow), SIRT2 (abcam 67299; 1:500), CD9 (abcam ab92726; 1:2000), CA2 ((Ghandour et al., 1980a (link); Ghandour et al., 1980b (link)); 1:1000; kindly provided by S. Ghandour, Strasbourg), ATP1A1 (abcam ab7671; 1:2500), ATP1A3 (abcam ab2826; 1:1000), beta3-Tubulin (TUBB3/Tuj1) (Covance MMS-435P; 1:1000). Secondary HRP-coupled antibodies were anti-mouse (dianova 715-035-020; 1:1000), -rabbit (dianova 711-035-152; 1:1000), or -goat (dianova 705-035-003; 1:500). Immunoblots were scanned using the Intas ChemoCam system.
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7

Western Blot Analysis of CagA and Exosome Markers

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CagA protein and exosome markers (CD9 and HSP70) were detected by western blotting. Equal amounts of cell lysates and exosomes were separated by 7.5% or 12.5% SDS-PAGE and transferred to polyvinylidene difluoride membranes (ATTO Co., Ltd., Japan). After blocking with 0.5% skim milk or Blocking One-P (Nacalai Tesque Inc., Kyoto, Japan) in TBST (20 mM Tris, 500 mM NaCl, pH 7.4, 0.05% Tween 20), membranes were blotted with the following primary antibodies: anti-HA antibodies (3F10; Roche), anti-CagA antibodies (AUSTRAL Biologicals), anti-phosphotyrosine antibodies (ab10321 [PY20]; Abcam), anti-CD9 antibodies (ab92726; Abcam), and anti-HSP70 antibodies (ab5439; Abcam). The membranes were then incubated with horseradish peroxidase (HRP)-conjugated secondary antibodies and ECL Western Blotting Detection Reagents (GE Healthcare). The bands were visualised using LAS-4000 (GE-Healthcare). For detection of tyrosine-phosphorylated CagA, the blot was first probed with anti-phosphotyrosine antibodies, stripped with EzReprobe reagent (ATTO Co., Ltd., Japan), and then reprobed with anti-CagA antibodies.
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8

Immunoblotting Analysis of Cellular Markers

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Immunoblotting was performed as previously described [7 (link)]. Proteins were detected using primary anti-CD9 (ab92726, Abcam), anti-TSG101 (T5701, Millipore Sigma), anti-FIH1 (SAB2101040, Millipore Sigma) and anti-GAPDH (437,000, Thermo Fisher Scientific) antibodies. Exposure of the resultant protein bands was performed with an ImageQuant LAS 4000 Luminescent Image Analyzer (GE Healthcare; Chicago, IL).
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9

Quantification of Urinary Extracellular Vesicle Proteins

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The total protein content of uEVs was quantified using the BCA method. Urine creatinine was used for normalization of the samples, as previously described (14 (link), 19 (link)). The protein samples were loaded based on the same amount of protein vs creatinine. Protein samples were separated using SDS-PAGE (4 to 12%, Biofuraw™ Precast Bis-Tris Gel), transferred to polyvinylidene difluoride membranes (Bio-Rad Laboratories), and blocked with 5% nonfat milk for 1 h at room temperature. Blots were incubated with primary antibodies against CD9 (1:1000, Abcam, ab92726), CD63 (1:1000, Abcam, ab134045), ALIX (1:1000, Cell Signaling Technology, 2171S), NCC (1:1000, StressMarq, SPC-402), and pNCC (1:1000, PhosphoSolutions, p1311-53) at 4°C overnight. Horseradish peroxidase-conjugated secondary antibodies were diluted in 5% BSA to detect the bound primary antibodies. Immunoreactive bands were detected using ECL reagent (Thermo Scientific, Waltham, MA), and densitometry measurements were performed using Image J (Version 1.53, NIH, USA). CD9 was used as a measure of EVs, and we compared the densitometry of protein vs CD9 between lanes.
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10

EV Protein Characterization and Quantification

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The protein samples of EV from different groups were lysed using RIPA buffer (Beyotime, China). Protein concentrations were determined using BCA Protein Assay Kit (Thermo Scientific). Samples were subjected to sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to nitrocellulose membranes (Immobilon P, Millipore, USA). The membranes were blocked with 5% milk in Tris-buffered saline containing 0.1% Tween-20 for 1 h at room temperature. Then, the membranes were incubated with primary antibodies at 4 °C overnight. The antibodies included anti-GM130 (Abcam, ab30637, 1:1000), anti-CD9 (Abcam, ab92726, 1:1000), anti-TSG101 (Abcam, ab125011, 1:1000). The membrane was then incubated with corresponding secondary antibodies for 1 h at room temperature. The bands were visualized using the ECL Prime Western Blotting Detection Reagent (GE, UK).
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