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5 protocols using «z vad fmk»

1

Immunoblotting Antibody Reagents and Protocols

2023
For immunoblotting, antibodies were purchased from Sigma-Aldrich (HRP-anti-Flag, Cat# A8592; anti-Myc-HRP, Cat# 16-213), Cell Signaling Technology (HRP-anti-rabbit IgG, Cat# 7074P2; HRP-anti-mouse IgG, Cat# 7076; anti-β-actin, Cat# 4967; anti-RIP1, Cat# 3493; anti-capsase8, Cat# 9746), ABclonal (anti-GAPDH, Cat# AC033; anti-HSPA8, Cat# A10898), Prosci (anti-mouse RIP3, Cat# 2283) and Abcam (anti-LAMP2A, ab125068; anti-V5-HRP, ab1325; anti-6×His, ab18184; anti-human p-MLKL, ab187091; anti-mouse p-MLKL, ab196436). Anti-human MLKL, anti-mouse MLKL and anti-human RIP3 antibodies are generated by our own laboratory.
Recombinant TNF was purified in the lab. ATP (#A600020-0005) was purchased from Sangon. Smac mimetics LCL161 (HY-15518), GSK872 (HY-101872), and NSA (HY-100573) were purchased from MedChemExpress. Trypsin (#25200072) was purchased from ThermoFisher Scientific. ThT (#596200), Flag beads (#M8823), Myc beads (#E6654), V5 beads (#A7345), Nec-1 (#N9037) phosphoenolpyruvate (#P7127) and pyruvate kinase (#P7768) were purchased from Sigma-Aldrich. Nec-1s (#2263) was purchased from BioVision. The TRIF(677–698) proteins and Z-VAD-FMK were custom-made by WuXi AppTec. Recombinant RHIM-containing proteins (RIP1(498–582), RIP3(418–518), and ZBP1(150–293)) and recombinant α-syn were generated previously.
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2

Necroptosis Induction and Detection Protocols

2022
Bafilomycin A1 (11038-500) and pepstatin A (9000469-10) from Cayman Chemical were applied to the cells at 100 nM and 10 μg/ml respectively. Chloroquine (C6628), MG132 (M7449), and 4-hydroxytamoxifen (4HT, H6278) from Sigma-Aldrich were applied at 25, 10, and 1 µM, respectively. To trigger necroptosis in HT-29 cells, human TNF from YbdY Biotech (1000 units/ml) was applied together with BV6 [58 (link)] and z-VAD-fmk, both from WuXi AppTec, at concentrations of 1 and 20 µM, respectively. Necroptosis was induced in the L929 cells by treatment with TNF (1000 U/ml) alone.
Strep-Tactin XT Superflow, 50% suspension (2-4010-025), and Strep-Tactin XT Elution Buffer (2-1042-025) were from IBA. Agarose-coupled TUBE1 (UM401) and K63-TUBE (UM604) were from LifeSensors. NI-NTA His-BIND resin (70666) was from Novagen. Brij O10 (polyoxyethylene 10 oleyl ether, P6136) and N-ethyl-maleimide (E3876) were from Sigma-Aldrich. The Lipofectamine 3000 transfection reagent (L3000015), CellLight Early Endosomes-green fluorescent protein (GFP) (10586), and CellLight ER-GFP (C10590) were from Thermo Fisher Scientific, and the JetPEI transfection reagent (101-10N) was from Polyplus-transfection. 1,10 Phenanthroline (SI 9649), ubiquitin-aldehyde (SI 250), and PR-619 (SI 9619) were from LifeSensors. Mouse interferon-β (12401-1) was from PBL Assay Science. Poly I:C (tirl-picw) was from Invivogen. Recombinant human MLKL (CSB-EP850851HU) and mouse MLKL (CSB-EP861529MO) were from Cusabio Technology and recombinant ITCH (E3-260) was from R&D Systems.
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3

RIPK1 Phosphorylation in MEFs

2018
MEFs immortalized by expression of the SV40 large T antigen were cultured in Dulbecco’s Modified Eagle’s Medium supplemented with 10% FBS, 100 U/ml penicillin, and 100 mg/ml streptomycin. RIPK1 phosphorylation was stimulated in the MEFs by their treatment for 3 h with TNF (1000 U/ml), together with the bivalent IAP (inhibitor of apoptosis protein) antagonist BV6 [51 (link)] and the caspase inhibitor z-VAD-fmk (both from WuXi AppTec) at concentrations of 1 and 20 μM, respectively.
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4

Cellular Signaling and Trafficking Assays

2017
RSV and cyclohexamide (Sigma-Aldrich, St. Louis, MO, USA), BafA1 (LC Laboratories, Woburn, MA, USA), Q-VD-OPH (BioVision, Milpitas, CA, USA), LysoTracker Red DND-99 (Invitrogen, Carlsbad, CA, USA), H2DCFDA (Invitrogen), Hoechst 33342 (Invitrogen), NSA (EMD Millipore, Billerica, MA, USA), TRAIL (Peprotech, Rocky Hill, NJ, USA), NBD-C6-GluCer and NBD-C6-Cer (Avanti Polar Lipids, Alabaster, AL, USA) were obtained from the indicated suppliers. TNF (Ybdy, Seoul, South Korea), pan-caspase inhibitor z-VAD.fmk and bivalent IAP antagonist BV6 (Wuxi Apptec, Shanghai, China) were kindly provided by Professor David Wallach, Weizmann Institute of Science, Rehovot, Israel and Brefeldin A (Calbiochem, San Diego, CA, USA) by Dr. Yifat Merbl, Weizmann Institute of Science, Israel. Unless specified, all other chemicals and reagents were purchased from Sigma-Aldrich.
A549 lung adenocarcinoma cells and human HT29 colorectal cancer cells were obtained from ATCC (Manassas, VA, USA) and verified to be mycoplasma free by periodical PCR testing. They were maintained in DMEM and McCoy’s 5A medium (Biological Industries, Cromwell, CT, USA), respectively. Both media were supplemented with 2 mM glutamine (Gibco, Saint Aubin, France), 100 U/ml penicillin and streptomycin (Gibco) and 10% FBS (Hyclone, Logan, UT, USA). Transient transfections of siRNA and DNA were performed using Lipofectamine2000 (Invitrogen) as per the manufacturer’s instructions. siRNA validation screen was performed in a 96-well format in reverse-transfection mode using DharmaFect1 transfection reagent (Dharmacon, Lafayette, CO, USA).
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5

Reagents and Compounds for Cell Assays

2015
TNF was obtained from Ybdy (Seoul, South Korea). The bivalent IAP antagonist BV622 (link) and the caspase inhibitor z-VAD.fmk were purchased from WUXI APPTEC (Shanghai, China). BHA, NAC, bacterial LPS, Nec-1, PI, 4-hydroxytamoxifen (4OHT), and Triton X-114 were from Sigma-Aldrich (St. Louis, MO, USA).
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