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Trypsin edta

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Trypsin-EDTA is a solution used in cell culture applications to dissociate adherent cells from their growth surface. It contains the proteolytic enzyme trypsin and the chelating agent EDTA, which work together to break down the cellular adhesions and allow the cells to be harvested and passaged.

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7 300 protocols using trypsin edta

1

Engineered Cellular Modification via PiggyBac

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Co-transposition was performed via electroporation of an additional 500 ng of PB-CG-Luciferase-EGFP (Puro) PiggyBac transposon and 500 ng of hyperactive PiggyBac transposase, as previously described,15 (link) alongside the aforementioned pCMV-BE3 and pENTR221-gRNA plasmids. In principle, cells that obtain a transposition event integrating the puromycin resistance gene are also more likely to have taken up Cas9/BE3 and gRNA expression plasmids and are thus more likely to be edited. Twenty-four hours post electroporation, percent GFP+ cells were observed to assess transfection qualitatively, and genomic DNA was harvested from half of the cells 72 h post electroporation. The remaining cells were plated with puromycin supplemented media for single colony isolation in a 15 cm polylysine-coated dish or serially diluted on a 96-well-plate. Single colonies on 15 cm plates were allowed to grow for 14 days or until visible to the naked eye, and were isolated with colony isolators and Trypsin-EDTA (Thermo Fisher Scientific) or picked with a 10 μL pipette tip of Trypsin-EDTA and transferred to a 24-well dish. Once clones reached >90% confluency, genomic DNA was harvested to assess editing.
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2

Fibroblast Cell Culture Conditions

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Cultures of healthy control BJ (ATCC® CRL-2522™) fibroblasts were obtained from American Type Culture Collection (ATCC, Manassas, VA, USA) and the ten patient-derived diseased fibroblasts (SBG1, SBG2, SBG3, SBG4, SBG5, SBG6, SBG7, SBG8, SBG9, SBG10) were obtained from the Medical University of Salzburg, Austria. These cells were maintained in a fibroblast expansion medium that consisted of minimal essential medium (MEM) (Thermo Fisher Scientific, Waltham, MA, USA), 10% fetal bovine serum (FBS) (GE Healthcare—HyClone™, Chicago, IL, USA), and 2 mM l-glutamine (Thermo Fisher Scientific). Fibroblasts were enzymatically passaged in 0.05% Trypsin-EDTA (Thermo Fisher Scientific). All cell cultures were maintained without the use of antibiotics, handled in Biosafety Type II sterile hoods regularly cleaned with UV irradiation and 70% ethanol, and grown in 37 °C incubators at 5% CO2 and 95% humidity. The culture medium was replenished every two days until cells became 80% confluent. Prior to use in experimentation, cells were dissociated using 0.05% Trypsin-EDTA (Thermo Fisher Scientific) and 20,000 cells were seeded into 35mm dishes for fluorescence labeling and image analysis.
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3

Cell Seeding and Live Cell Quantification

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Cells were seeded at approximately 80% confluency in 6-well plates overnight: 350 000 (HBEC); 340,000 (PC-9); 340,000 (H1975); 1,200,000 (HCC4006); 2,400,000 (HCC4011); 850,000 (H3255). Plates were rinsed twice with PBS and media was changed to supplement-free or serum-free conditions and incubated for 24 hours. HBECs were incubated with either supplement-free KSFM and 1% Penicillin-Streptomycin, or KSFM supplemented with BPE (50μg/mL), EGF (5ng/mL), and 1% Penicillin-Streptomycin. NSCLC cell lines were incubated with either serum-free RPMI-1640 and 1% Penicillin-Streptomycin, or RPMI-1640 supplemented with 10% FBS and 1% Penicillin-Streptomycin. Post-incubation, cells were trypsinized with 0.05% Trypsin-EDTA (Thermo Fisher Scientific; HBEC) or 0.25% Trypsin-EDTA (Thermo Fisher Scientific; NSCLC). Trypsinization was neutralized with either trypsin neutralizer (Thermo Fisher Scientific; HBEC) or RPMI-1640 containing 10% FBS (NSCLC), cells mixed in 0.4% Trypan Blue solution (Thermo Fisher Scientific) at a 1:1 ratio, and live cell population determined with a TC20 automated cell counter (Bio-Rad). The average percent live cell population was determined from the average of 3 wells with the unpaired Student’s T-test in Graphpad Prism6 (2 counts per well).
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4

Isolation and Expansion of Mouse Neural Stem Cells

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Neural stem cells (NSCs) were isolated from C57BL/6 mouse brains at embryonic day 14. The forebrain was separated and dissected out and digested in 0.25% trypsin‐EDTA (Thermo Fisher) for 10 minutes at 37°C. Dissected tissues were resuspended briefly by pipetting and filtering them through a 40‐μm strainer after inactivation of trypsin‐EDTA by FBS (Thermo Fisher). Cell suspensions were plated on Matrigel (Thermo Fisher)‐coated dishes in an NSC culture medium (DMEM/F12 [Thermo Fisher]) supplement with 1% N2 (Thermo Fisher), 2% B27 (Thermo Fisher), 1% penicillin/streptomycin (Thermo Fisher), 1% GlutaMAX (Thermo Fisher), and 10 ng/mL of bFGF and EGF (PeproTech, USA). Before using them in experiments, NSCs were processed multiple times (>3).
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5

Cervix Cell Isolation and Purification

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Immediately following the collection of the cervix, the tissue was mechanically dissociated and enzymatically digested using Collagenase A (160 mg/mL) (Sigma Aldrich) and incubated at 37°C. Then, the dissociated cells were pelleted by centrifugation at 16,000 × g for 10 min at 20°C and resuspended with 0.05% trypsin-EDTA (Thermo Fisher Scientific, Waltham, MA) prior to a second round of mincing and incubation in 0.05% trypsin-EDTA at 37°C. The enzymatic reaction was stopped by the addition of FBS (Fetal Bovine Serum, Thermo Fisher). Cells were then filtered using a 70 μm cell strainer (Miltenyi Biotec, San Diego, CA, USA) and pelleted by centrifugation at 300 × g for 10 min. Erythrocytes were removed using ACK Lysing Buffer (Life Technologies, Grand Island, NY, USA). Finally, the cells were resuspended in 0.04% BSA diluted in 1X PBS and filtered through a 30 μm cell strainer. The cell concentration and viability were determined using an automatic cell counter (Cellometer Auto 2000, Nexcelom Bioscience, Lawrence, MA, USA) and the Dead Cell Removal Kit was used to remove dead cells to obtain a cell viability of ≥80%.
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6

FACS Isolation of Pluripotent Stem Cells

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Cells were dissociated using Accutase (Thermo Fisher Scientific, 00-4555-56) (for NPCs), 0.05% Trypsin-EDTA (Thermo Fisher Scientific, 25300054) (for ESCs) or 0.25% Trypsin-EDTA (Thermo Fisher Scientific, 25200056) (for iPSCs) and then stained with SSEA-1 eFluor 660 (Invitrogen, 50-8813-42, eBioscience eBioMC-480 (MC-480)) at a dilution of 1/100 for 15 min at 4 °C. Cells were washed once with 0.5% BSA in PBS and then FACS sorted using a BD FACSAria II SORP or a BD Influx. Gating strategy is exemplified in Supplementary Fig. 7.
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7

Passaging HEK and HMC3 Cell Lines

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HEK cells were maintained in T75 flasks with 15 ml medium. Culture conditions were 37 °C and 5% CO2. In order to passage cells, old medium was aspirated and cell layer was washed with 10 ml DPBS (37 °C). PBS was aspirated and 3 ml Trypsin-EDTA (ThermoFisher; 25300-054; 37 °C) were added for approximately 1 min until the cell layer detached. Trypsinization was stopped with 10 ml medium (37 °C). Cells were pelleted at Trypsin-EDTA (ThermoFisher; 25300-054; 37 °C). Supernatant was aspirated and pelleted cells were resuspended thoroughly in 10 ml medium (37 °C). Cells were counted and 0.5–0.75 million cells were transferred to a new culture flask within a final volume of 15 ml medium (37 °C). Cells were passaged every 3–4 days when they reached approximately 80% confluency.
HMC3 cells were maintained in 10 cm dishes (Sigma, CLS430167) with 10 ml medium. Culture conditions were 37 °C and 5% CO2. For passaging, old medium was aspirated and cell layer was washed with 10 ml DPBS (37 °C). PBS was aspirated and 3 ml Trypsin-EDTA were added for approximately 5–15 min until the cell layer detached. Trypsinization was stopped with 10 ml medium (37 °C). Cells were counted from this suspension and 0.25–0.5 million cells were transferred to a new culture dish within a final volume of 10 ml medium (37 °C). Cells were passaged every 3–4 days when they reached approximately 80% confluency.
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8

Establishing and Culturing HER2+ Breast Cancer Cell Lines

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D16-BO-QD cell line (QD for short) was established in our laboratory from a transgenic HER-2-positive mammary carcinoma of a Delta16 female mouse. QD cell line was cultured in MammoCult medium (STEMCELL Technologies, Vancouver, Canada) supplemented with 1% fetal bovine serum (FBS), 100 U/mL penicillin and 10 μg/mL streptomycin (all from Thermo Fisher Scientific).
Human HER-2+ breast cancer cell line BT-474 (HER-2+++ cell line) and its trastuzumab-resistant clone C5 [24 (link)] were routinely cultured in RPMI (Thermo Fisher Scientific) supplemented with 10% FBS, 100 U/mL penicillin and 10 μg/mL streptomycin.
Cells were cultured at 37 °C in a humidified 5% CO2 atmosphere and were split once or twice a week according to density using 0.05% trypsin EDTA (Thermo Fisher Scientific).
HER-2 expression of all cell lines is shown in Supplementary Figure S1.
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9

Isolation and Culture of Murine DRG Neurons

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Lumbar DRG were harvested from adult ADAM17ex/ex and ADAM17+/+ mice and prepared as previously described (14 (link), 30 (link)). Briefly, ganglia were incubated in Liberase Blendzyme 1 (9 mg/100 ml DMEM; Roche, Basel, Switzerland) for 2 times 30 min, washed, and incubated with Trypsin-EDTA (Thermo Fisher Scientific) for 15 min. After washing with supplemented TNB medium (Biochrom, Berlin, Germany) with l-glutamine (Thermo Fisher Scientific), penicillin G sodium, streptomycin sulfate (Thermo Fisher Scientific), and Protein-Lipid-Komplex (Biochrom AG), DRG were dissociated and centrifuged through a 3.5% bovine serum albumin gradient. The sensory neurons were resuspended and plated on coverslips coated with a mixture of poly-L-Lysine/laminin (MilliporeSigma) and kept in TNB medium containing protein lipid complex, supplemented with 25 ng/ml nerve growth factor (NGF) (Alomone Labs, Jerusalem, Israel) at 37°C in a humidified incubator with 5% CO2.
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10

Cell Culture Reagent Acquisition

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MEM-α, glutamine, HEPES, penicillin-streptomycin, trypsin-EDTA, DPBS, sodium pyruvate, and HBSS were purchased from Thermo Fisher Scientific (Waltham, MA, USA; Invitrogen brand). FBS was purchased from HyClone Laboratories, Inc. (Logan, UT, USA). Dabrafenib was purchased from LC Laboratories (Woburn, MA, USA). 3-aminopropylphosphonate (3-APP) was purchased from AmBeed, Inc. (Arlington Heights, IL, USA). Trimethylsilyl propanoic acid (TSP) was purchased from Sigma-Aldrich, Inc. (St. Louis, MO, USA).
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