The largest database of trusted experimental protocols

5 protocols using as01 003

1

Immunoblotting of Photosynthetic Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total proteins were isolated from whole seedlings (grown under long-day conditions with 100 µmol·m−2·s−1 light intensity at 22 °C for 10 days as indicated). Proteins were separated by 4–12% SDS-PAGE gel. After the proteins were transferred electrophoretically onto the nitrocellulose filter membrane, the membrane was incubated with corresponding antibodies. Anti-ATPC1 (AS08312, Agrisera, Vännäs, Sweden), anti-GAPDH (K90002P, Solarbio, Beijing, China), anti-PSAD (PHY0056A, PhytoAB, San Jose, CA, USA), anti-PSBQ (PHY2346A, PhytoAB, San Jose, CA, USA), anti-LHCA1 (PHY0043A, PhytoAB, San Jose, CA, USA), anti-LHCA6 (PHY0470S, PhytoAB, San Jose, CA, USA), anti-LHCB2 (AS01003, Agrisera, Vännäs, Sweden), and anti-RuBisCo (AG5359, Beyotime, Shanghai, China) antibodies were used for immunoblot analysis. GAPDH was used as the reference protein to determine the amount of protein loaded.
+ Open protocol
+ Expand
2

Evaluating Photosystem II Alterations in Tomato Plants

Check if the same lab product or an alternative is used in the 5 most similar protocols
The alterations in photosystem II were evaluated using an analysis of CP43, CP47, Lhcb1 and Lhcb2 polypeptides. Proteins of thylakoid membranes from the controls and treated tomato plants grown under different combinations of temperature and light intensity were analyzed in a Laemmli SDS–PAGE system. The polyacrylamide concentrations of the stacking and resolving gels were 4 and 12%, respectively, with 4 M urea added to the resolving gel. The samples were incubated with a sample buffer (3:1) in the dark for 1 h at room temperature. Equal volumes of thylakoid membranes, corresponding to 3 µg Chl were loaded in every line. The proteins were transferred from gel to nitrocellulose membranes, and proteins were probed with antibodies for CP43 (AS11 1787 at a dilution of 1:3000, Agrisera, Vännäs, Sweden), CP47 (AS04 038 at a dilution 1: 2000, Agrisera, Vännäs, Sweden), Lhcb1 (As01 004 at a dilution of 1:2000, Agrisera, Vännäs, Sweden) and Lhcb2 (AS01 003 at a dilution 1:5000, Agrisera, Vännäs, Sweden). The Alkaline Phosphatase Conjugate Substrate Kit (Bio-Rad, Hercules, CA, USA) with goat anti-rabbit (GAR) secondary antibodies was used for the development of the blocked membranes, which were quantified with ImageJ software. Immunoblotting was repeated 3 times with thylakoid membranes from two different experiments.
+ Open protocol
+ Expand
3

Immunoblotting of Photosynthetic Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
BS strands were isolated following the procedure of Ghannoum et al. (2005 (link)). Total protein extracts were isolated from 0.7 cm2 frozen leaf discs or from BS strands as described in Ermakova, Bellasio, et al. (2021 (link)), loaded on leaf area or protein basis and separated by SDS‐PAGE as described in Ermakova et al. (2019 (link)). Proteins were then transferred to a nitrocellulose membrane and probed with antibodies against various photosynthetic proteins in dilutions recommended by the producer: Rieske (AS08 330; Agrisera, Vännäs, Sweden), D1 (AS10 704; Agrisera), AtpB (AS05 085; Agrisera), PsbS (AS09 533; Agrisera), Lhcb2 (AS01 003; Agrisera), RbcL (Martin‐Avila et al., 2020 (link)), PEPC (Ermakova, Arrivault, et al., 2021 (link)). Quantification of immunoblots was performed with Image Lab software (Biorad, Hercules, CA).
+ Open protocol
+ Expand
4

Thylakoid Protein Separation and Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
For native PAGE, thylakoids were solubilized with 1% digitonin as previously described (Suorsa et al., 2015 (link)), separated with large pore blue native (lpBN)-PAGE as previously described (Järvi et al., 2011 (link)), and either stained with Coomassie brilliant blue or electroblotted to a polyvinylidene difluoride (PVDF) membrane. For one-dimensional SDS-PAGE, thylakoids were solubilized, separated by gel electrophoresis with 15% (w/v) polyacrylamide and 6 M urea and subsequently electroblotted. For 2D gels, the second dimension was run for 3 h at 200 V for an additional ‘3D’ dimension, and the band corresponding to PSII monomer/cytochrome b6f (Cyt b6f) was immediately placed on top of a second BN gel with a gradient of 7.5–9.5%.
The antibodies used for immunoblotting were Lhcb1, Lhcb2, P-Lhcb1, P-Lhcb2, CP47, PSB33, STN7 (Agrisera; catalogue numbers AS09 522, AS01 003, AS13 2704, AS13 2705, AS04 038, AS12 1852 and AS10 1611) and TAP38. The TAP38 antibody was a kind gift from Prof. Roberto Barbato. Immunodetection was performed according to standard procedures, with horseradish peroxidase-linked secondary antibody and enhanced chemiluminescence reagents (Amersham, GE Healthcare) used for detection.
+ Open protocol
+ Expand
5

Solubilization and Analysis of Thylakoid Protein Complexes

Check if the same lab product or an alternative is used in the 5 most similar protocols
To solubilize the thylakoid protein complexes from the thylakoid samples isolated with or without 5 mM MgCl2, the samples were diluted in BTH buffer [25 mM Bis/Tris/HCl (pH 7.0), 20% (w/v) glycerol, 0.25 mg/ml Pefabloc and 10 mM NaF]. An equal volume of 2% digitonin (Merck, Calbiochem) in BTH buffer was added to the sample to achieve a final concentration of 0.5 mg ml−1 of Chl and 1% digitonin in the sample and separated with BN-PAGE as described previously (Rantala et al. 2018b ). To investigate the distribution of Lhcb2 proteins in different pools of LHCII trimers, 2D-BN-BN-PAGE was performed as described in (Rantala et al. 2018a ). The 2D-BN gels were electroblotted to PVDF membranes and immunoprobed with pLhcb1 and pLhcb2 antibodies (Agrisera AS13 2704 and AS13 2705, 1:10,000 dilution in 1% BSA) and with Lhcb1, Lhcb2 and Lhcb3 antibodies (Agrisera AS01 004, AS01 003 and AS01 002). (1:2,000–1:5,000 dilution in 1% BSA).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!