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Antibiotic antimycotic solution

Manufactured by Lonza
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Antibiotic-antimycotic solution is a sterile liquid that contains a combination of antibiotics and antifungal agents. It is designed to prevent bacterial and fungal contamination in cell culture and other laboratory applications.

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33 protocols using «antibiotic antimycotic solution»

1

Protocols for Leukemia Cell Line Cultivation

2025
AML cell lines MV4-11 (mutated FLT3-ITD) and U937 (wild-type FLT3-ITD, t(10;11)(p13;q14)), U937-Luciferase, THP-1, HL60, MOLM-14-Luciferase, and chronic myeloid leukemia (CML) cell lines K562 and multiresistant K562 (K562R) were used. MV4-11, U937, THP-1, HL60, and K562 cells were purchased from Deutsche Sammlung von Mikroorganismen und Zellkulturen (DSMZ, Braunschweig, Germany). The MOLM-14-Luciferase and U937-Luciferase cell lines were kindly provided by Dr. Jean-Emmanuel Sarry (Université Toulouse III-Paul Sabatier, France). Table S2 summarizes the cell lines used in this study.
MV4-11 and MOLM-14-Luciferase cells were cultured in RPMI 1640 medium (Lonza, Walkersville, MD, USA) supplemented with 10% (v/v) fetal bovine serum (FBS; Opti-Gold, GenDEPOT, Katy, TX, USA) and 1% penicillin–streptomycin (Lonza, Basel, Belgium) at 37 °C with 5% CO₂. U937, U937-Luciferase, HL-60, and THP-1 cells were grown in RPMI 1640 medium (Lonza) with 10% (v/v) FBS (Biowest, Riverside, MO, USA) and 1% penicillin–streptomycin. K562 cells were maintained in RPMI 1640 with 10% (v/v) FBS and 1% (v/v) antibiotic–antimycotic solution (Lonza) at 37 °C and 5% CO₂. The multi-resistant K562 (K562R) cell line was provided by Professor Dong-Wook Kim (Catholic University of Seoul, Republic of Korea) with specific cell culture conditions. After thawing, K562R cells were resuspended in 10 mL of RPMI 1640 supplemented with 25 mM HEPES, 10% fetal bovine serum (FBS), and 1% antibiotic-antimycotics. After 48 h, cell viability was assessed, and all living cells were resuspended in 20 mL of fresh, complete cell culture medium in a 75 cm2 flask. After 48 h, cells were counted and seeded at 500,000 cells/mL in 30 mL of fresh, complete growth medium supplemented with 1 µM imatinib. After 48 h, the cells were centrifuged, counted, and seeded for a second time at 500,000 cells/mL in 30 of mL fresh, complete growth medium supplemented with 1 µM imatinib. After 48 h, viability was assessed, and cells were washed three times in 1X PBS and resuspended in 30 mL of fresh, complete growth medium at a density of 300,000 cells/mL, without imatinib, for experimental use. All cell lines were cultured according to standard protocols and mycoplasma testing was performed monthly using the MycoAlert™ PLUS Mycoplasma Detection Kit (Lonza, Walkersville, MD, USA).
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2

Cell Viability Assay for Hypoxic Conditions

2024
In brief, the cells were seeded in a 96-well plate at a concentration of 1 × 102 or 1 × 203 cells/well in 200 µL fresh DMEM (Lonza) supplemented with 10% FBS (EuroClone), 1% antibiotic–antimycotic solution (Lonza) and left to attach to the plates for 24 h. Then, cells were incubated at 37 °C in a humidified 5% CO2 atmosphere or for hypoxic conditions, cells were incubated in 1% O2, 5% CO2 and 94% N2 for 48 h. After that, the cells were washed and fixed with 100 µL cold 10% Trichloroacetic acid (TCA) for 1 h at 4 ℃. The wells were then washed 2 times with distilled water and stained for 15 min at room temperature with 70 µL 0.4% SRB dissolved in 1% acetic acid. Then, cells were washed with 1% acetic acid 3 times. The plates were air-dried and the dye was solubilized with 200 µl/well of 10 mM tris base (pH 10.5) for 10 min. The optical density (O.D.) of each well was measured spectrophotometrically at 570 nm with BioTek 800 microplate reader (Agilent, Santa Clara, CA) with automatic shaking for 30 s before reading. The mean background absorbance was subtracted automatically and mean values for each conditions were calculated.
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3

Lung Adenocarcinoma Cell Line Culture

2024
Human lung adenocarcinoma cell lines PF901, PF139, H838 and H1975 were cultured in DMEM (Dulbecco’s Modified Eagle Medium; Lonza, Basel, Switzerland); containing 4500 mg/dm3 glucose, pyruvate and L-glutamine) supplemented with 10% FBS (Fetal Bovine Serum; EuroClone, Pero, MI, Italy), 1% antibiotic–antimycotic solution (Lonza) and incubated at 37 °C in a humidified 5% CO2 atmosphere. For hypoxia measurements, cells were cultured in 1% O2, 5% CO2 and 94% N2 to stimulate the hypoxic environment. H838 cells were purchased from Horizon Discovery Ltd, while H1975 cells derived from ATCC. PF139 and PF901 cells were established from malignant pleural effusion samples in cooperation with the West German Biobank Essen as described earlier43 (link),44 (link). The patients provided written informed consent and the experiments were approved by the Ethics Committee of the University Hospital Essen (#18-8208-BO). Otherwise, this study does not include experimental animals or human participants. All experiments were performed in accordance with relevant guidelines and regulations.
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4

Cell Line Culture for Cancer Research

2024
AGS (gastric cancer), HCC827 (lung cancer), Huh7 (liver cancer), U87MG (glioblastoma), and MDA-MB-231 (breast cancer) cell lines were sourced from the Korean Cell Line Bank (Seoul, Republic of Korea). These cells were grown in RPMI-1640, DMEM, or MEM media (HyClone, Marlborough, MA, USA), each supplemented with 10% fetal bovine serum (FBS) (R&D Systems, Minneapolis, MN, USA) and 1% antibiotic/antimycotic solution (Lonza, Walkersville, MD, USA). Cultures were kept at 37 °C in a controlled humidity incubator (Thermo Fisher Scientific, Vantaa, Finland) under a 5% CO2 atmosphere.
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5

Transfection of CCDC88C in HEK293 cells

2023
The HEK293 cell line (Merck, Darmstadt, Germany) was maintained in Dulbecco’s Modified Eagle Medium (DMEM) supplemented with 10% fetal bovine serum (FBS, Lonza, Basel, Switzerland), 1% L-glutamine (Lonza) and 1% antimycotic–antibiotic solution (Lonza) at 37 °C in a humidified atmosphere with 5% CO2.
For transfection, cells were seeded into 12-well plates at a density of 300,000 cells/mL in full medium. After 48 h, medium was changed to FBS-free medium, and cells were co-transfected with the AP1–LUC cis-reporter plasmid, the pGL4.75 (hRluc/CMV) plasmid (Promega), which was used as internal control, and 1µg pcDNA3.1+/C-(K)DYK vector (GenScript) carrying the WT or mutant CCDC88C cDNA sequences. Transfection was carried out with the Lipofectamine 3000 transfection reagent (Thermo Fisher Scientific, Waltham, MA, USA), according to the manufacturer’s instructions. Mock-transfection by transfection reagent and cotransfection of luciferase plasmids with the empty pcDNA3.1(+) plasmid served as control. Twenty-four hours after transfection, cell samples were collected for extraction of proteins, which were subjected to luciferase activity measurement or to TUNEL assay.
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Top 5 protocols citing «antibiotic antimycotic solution»

1

IFNγ Production Assay for Neospora Infection

To ensure that blood cells retained the capacity to respond to stimulation and to secrete IFNγ, heparinised blood samples were processed within 2 h of collection by mixing 500 μL blood with 500 μL RPMI 1640 medium (Gibco, Paisley, UK) supplemented with 10% foetal bovine serum (FBS; Thermo Fisher Scientific, Waltham, USA) and 100X antibiotic/antimycotic solution (Lonza, Belgium). Blood cells were cultured in 24-well flat-bottom plates (Thermo Fisher Scientific, Waltham, USA) in the presence of either soluble N. caninum antigens or concanavalin A (ConA, Sigma-Aldrich, Madrid, Spain), both at final concentrations of 5 μg/mL. All experiments were performed in duplicate. Plates were incubated in a 5% CO2/37 °C/100% humidity atmosphere for 24 h. They were then centrifuged at 1000 × g for 10 min at 4 °C, and cell-free culture supernatants were stored at −80 °C for IFNγ analyses. IFNγ was detected using a commercial bovine enzyme immunoassay kit with a capture monoclonal antibody (MT17.1) showing cross-reactivity with ovine IFNγ (Mabtech AB, Sweden) as previously described (Arranz-Solís et al., 2016 (link)). Mean optical density (OD) for each experimental animal was calculated as the mean OD obtained from each supernatant from the N. caninum antigen-stimulated cells divided by the mean OD of the same cells incubated with medium alone (negative control). Afterwards, the mean OD was calculated for each experimental group. Supernatant from ConA-stimulated cells was processed in a similar way as a positive control for stimulation but was not included in the subsequent analysis.
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2

Porcine Aortic Valve Cell Isolation

Primary VICs were harvested from aortic valve leaflets dissected out of fresh porcine hearts from a commercial abattoir (Fisher Ham and Meats, Spring, TX, USA). The leaflets were incubated with collagenase type II (550 U/ml, 30 min; Worthington Biochemical, Lakewood, NJ, USA), followed by manually scraping off endothelial cells and mincing the leaflets, which were then digested with collagenase type III (260 U/ml, 4 h; Worthington) in an incubated shaker (Stephens et al., 2007 (link)). Isolations from six different donors were pooled together to compensate for biological variability. The cells were cultured on tissue culture polystyrene flasks in growth medium [GM; 1:1 Dulbecco’s modified Eagle’s medium (DMEM; Corning, Tewksbury, MA, USA):F12 (Hyclone, Thermo Fisher Scientific, Waltham, MA, USA) with 10% bovine growth serum (BGS; Hyclone), 1.6% 1-m-4-(2-hydroxyethyl)-1- piperazine-ethanesulphonic acid (HEPES; Thermo Fisher Scientific) and 1% antibiotic–antimycotic solution (Lonza, Walkerville, MD, USA)] before being encapsulated. After encapsulation, cell-laden hydrogels were cultured in GM for 1 day and changed to different medium conditions, including GM, or GM supplemented with 50 μg/ml AA (GM + AA), or osteogenic medium (Osteo M; GM supplemented with 50 μg/ml AA, 10mM β-glycerophosphate disodium and 10 nM dexamethasone).
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3

Multilineage Differentiation of eCB-MSCs

As with flow cytometry analysis, eCB-MSC cultures from static and bioreactor conditions were thawed and expanded in T-flasks until the appropriate cell number was reached. Osteogenesis and adipogenesis: 6-well plates were seeded at 5000 cells/cm2 in MSC expansion medium containing bFGF and grown to 80% confluency. Commercial osteogenic differentiation medium (BulletKit; Lonza, Walkersville, MD, USA Cat. PT-3002) was used to induce osteogenesis in half of the wells (the remaining wells were cultured in MSC expansion medium containing bFGF as a negative control). Adipogenic induction medium consisted of DMEM-LG (Lonza), 15% rabbit serum (Cat. R9133), 500 μM 3-isobutyl-1-methylxanthine (Cat. I5879), 2 mM L-glutamine, 1x antibiotic/antimycotic solution (Cat. A5955), 1 μM dexamethasone (Cat. D2915), 10 μg/ml human insulin (Cat. I9278), 200 μM indomethacin (Cat. I7378) (all from Sigma). Media was changed three times per week and differentiation was terminated after 14 days. To verify osteogenic and adipogenic induction, wells were stained with Alizarin Red and Oil Red O, respectively, as previously described [2 (link)].
Chondrogenesis: Chondrogenic induction was performed in pellet culture as previously described [27 ]. Media was changed three times per week and induction was terminated after 21 days. Pellets were fixed in 10% formalin overnight, then sectioned at 5 μM and stained with toluidine blue to assess chondrogenic differentiation.
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4

Cerebellar Granule Neuron Apoptosis Assay

Animals-Wistar rats (Charles River Laboratories, Arbresle, France) were kept in a temperature-controlled room (21 Ϯ 1 °C) under an established photoperiod (lights on 07.00 -19.00 h) with free access to food and tap water. Animal manipulations were performed according to the recommendations of the French Ethics Committee and under the supervision of authorized investigators.
Reagents-Multiple-associated peptide (MAP)-C3a and MAP-C5a are eight peptidic monomers corresponding to the last 13 amino acids in the C-terminal region of the anaphylatoxins attached to a polylysine comb (a gift of Dr. Ischenko). These peptides were previously used and were shown to exhibit the same activity as recombinant or natural anaphylatoxins (41) (42) (43) . C5aR antagonist (44) was synthesized by Dr J. Leprince (INSERM U413). Anti-mouse C3aR and anti-rat C5aR were obtained by immunization of rabbits with recombinant fusion proteins consisting of glutathione S-transferase fused to the region 161-333 of the large extracellular loop of mouse C3aR and to the 29-amino acid peptide corresponding to the 8 -36 sequence of the N-terminal region of rat C5aR (according to EMBL library index accession numbers NM_009779 and Y09613, respectively).
Cell Culture-Granule cell suspensions were prepared from cerebelli of 8-day-old Wistar rats, as described previously (45) . Dispersed cells were seeded in multiwell plates or dishes (Falcon, BD Biosciences) coated with 10 M poly-L-lysine (Sigma) at a density of 2.5 ϫ 10 5 cells per cm 2 . Granule neurons were plated in a medium consisting of 75% Dulbecco's modified Eagle's medium (Invitrogen) and 25% Ham's F-12 medium (Sigma) containing 2 mM glutamine, 1 mM sodium pyruvate, 1% antibiotic-antimycotic solution (BioWhittaker, Verviers, Belgium) supplemented with 25 mM KCl and 10% fetal calf serum (SϩK25). Proliferation of non-neuronal cells was blocked by the addition of 10 M cytosine ␤-D-arabinofuranoside (Sigma) on day 1 in vitro (DIV 1). Cultures prepared by this method were enriched in granule neurons by more than 95%; the cell population was negative for glial fibrillary acidic protein (Sigma), OX 42 (ATCC, Manassas, VA), and calbindin D28K (Sigma) staining (data not shown). Cells were grown at 37 °C in a humidified incubator with an atmosphere of 5% CO 2 .
RNA Isolation and Real-time Quantitative Reverse Transcription (RT)-PCR-Total RNAs were extracted from cultured granule cells by the guanidinium isothiocyanate method followed by ultracentrifugation onto a CsCl cushion as previously described (46) . Total RNAs (2 g) were incubated at 70 °C for 10 min, and RT was carried out in a thermocycler (Hybaid, Cera-Labo, Ecquevilly, France) at 37 °C for 1 h with 5 mM dithiothreitol, 1 mM dNTPs, 500 pmol of random hexamer primers pdN6 (Amersham Biosciences), 120 units of RNasin (Promega, Charbonnie `res, France), and 400 units of Moloney murine leukemia virus (M-MLV) RT (Promega) in the reaction buffer (50 mM Tris-HCl, 75 mM KCl, 3 mM MgCl 2 , and 5 mM dithiothreitol). The absence of genomic contaminant was checked routinely by RT-PCR in negative control samples in which either the RNA samples were replaced with sterile water or the Moloney murine leukemia virus RT was omitted.
PCR was carried out by using the LightCycler FastStart DNA Master SYBR Green I kit (Roche Applied Science), which is specially adapted for the LightCycler instrument (Roche Applied Science), and the PCR reaction was performed in a final volume of 20 l in the LightCycler glass capillaries according to the manufacturer's recommendations. The primers used in our study were: RC3a forward (GAC CTA CAC TCA GGG C), RC3a reverse (ATG ACG GAC GGG ATA AG), RC5a forward (ATG CCT GCA GAT GGC GTT TA), and RC5a reverse (CAG AAA CCA AAT GGC GTT GAC). The housekeeping gene primers were glyceraldehyde-3-phosphate dehydrogenase forward (TGC CAT CAA CGA CCC CTT CA) and glyceraldehyde-3-phosphate dehydrogenase reverse (TGA CCT TGC CCA CAG CCT TG). Primers were chosen according to their cDNA sequences reported in the EMBL data library index accession numbers M33197 for glyceraldehyde-3-phosphate dehydrogenase, NM_032060 for C3aR, and Y09613 for C5aR. Southern Blot Analysis-RT-PCR products (5 l) were loaded onto a 1% agarose gel and separated by electrophoresis. The gel was treated for 10 min in 0.15 M HCl and neutralized for 30 min in 0.4 M NaOH. Southern blotting was performed by capillary transfer for 16 h in 0.4 M NaOH onto Nylon Plus membranes (Amersham Biosciences). The blot was neutralized for 10 min in 2ϫ SSPE (0.3 M NaCl, 17 mM Na 2 HPO 4 , and 50 mM EDTA). Rat C5aR and mouse C3aR cDNA probes were labeled by using Rediprime Kit (Amersham Biosciences) with [ 32 P]dCTP (Amersham Biosciences) at a specific activity of 2 ϫ 10 9 cpm/g. Membranes for C5aR were pre-hybridized in homologous conditions at 42 °C for 4 h in a solution containing 50% formamide, 5ϫ SSPE, 1% SDS, 5ϫ Denhardt's, 5% dextran sulfate, and 100 g/ml herring sperm DNA, whereas membranes for C3aR were pre-hybridized in heterologous conditions in a solution containing 20% formamide, 4ϫ SSPE, 0.05 M Tris-HCl, pH 7.5, 1 M NaCl, 0.1% SDS, 10ϫ Denhardt's, and 100 g/ml herring sperm DNA. Hybridization was performed at 42 °C for 16 h in the same solutions supplemented with 10 8 cpm of labeled probe. The membranes were washed briefly 3 times at room temperature in 2 ϫ SSPE, 0.1% SDS, for 1 h at 68 °C for C5aR and 60 °C for C3aR in 2ϫ SSPE, 0.1% SDS, and for 1 h at 68 °C for C5aR and 60 °C for C3aR in 1ϫ SSPE, 1% SDS and exposed for 4 h at room temperature onto X-Omat film (Eastman Kodak Co.).
Flow Cytometry Analysis-Neurons were harvested from cultures by incubation in phosphate-buffered saline (PBS) containing 10 mM EDTA. Cells were washed and resuspended in PBS containing 1% bovine serum albumin (BSA) and incubated with 10 g/ml non-immune mouse IgG for 15 min. After washing, cells were incubated with 2 g/ml anti-C3aR or anti-C5aR IgG or anti-␥-aminobutyric acid, type A receptor ␣6 subunit (Chemicon, Euromedex, Souffelweyersheim, France) diluted 1:100 in PBS containing 1% BSA at 4 °C for 30 min. After washing, cells were incubated at 4 °C for 30 min with fluorescein isothiocyanate-conjugated goat anti-rabbit IgG (Jackson Immuno Research, Interchim, Montluc ¸on, France) diluted at 1:200 and measured in a FL-1 channel (530 Ϯ 15 nm bandpass filter). For two-color flow cytometric analysis, cells were incubated in PBS containing 1% BSA and 0.1% saponin for 30 min with biotinylated anti-C3aR or biotinylated anti-C5aR (2 g/ml) and monoclonal anti-neurofilament 68 clone NR4 (Sigma) diluted 1:100. After washing, cells were incubated for 30 min with streptavidin cyanine 5 (measured in FL-4 channel, 661 Ϯ 8 nm bandpass filter) diluted 1:500 and with fluorescein isothiocyanateconjugated goat anti-mouse IgG (FL-1) diluted 1:200. Cells were washed before analysis on a FACScalibur flow cytometer (BD Biosciences) operating with the Cell Quest TM software. Dead cells and debris were excluded from the analysis by gating living neurons from size/structure density plots. Data were displayed on a logarithmic scale with increasing fluorescence intensity. Each histogram plot was recorded for at least 10,000 gated events.
Immunocytochemistry-Granule cells were fixed with 1% formaldehyde in PBS at room temperature for 20 min. Fixed cells were incubated 1 h at room temperature with 2 g/ml anti-C3aR or anti-C5aR or with anti-neurofilament 68 diluted 1:100 in PBS containing 1% BSA. After several rinses in PBS, cells were incubated at room temperature for 2 h with peroxidase-conjugated Affinipure goat anti-rabbit or anti-mouse IgG (Jackson Immuno Research) diluted 1:1000 in PBS containing 1% bovine serum albumin. Cells were washed twice with PBS. The immunoreactivity was revealed by adding 0.5 mg/ml diaminobenzidine (Sigma) and 0.015% H 2 O 2 in PBS. The reaction was stopped by removing the diaminobenzidine solution and by rinsing in a large volume of water. The immunolabeling was analyzed using a computer-assisted microscope AxioVert (Zeiss, Le Pecq, France).
Immunohistochemistry-Rats were deeply anesthetized with chloral hydrate (400 mg/kg intraperitoneal) and transcardially perfused and fixed with 4% paraformaldehyde in PBS. The cerebellum was removed, post-fixed for 12 h in 4% paraformaldehyde, and placed in 15 and 30% sucrose until they sank. Tissue sections (10-m thick) were cut with a cryostat (Leica, Rueil-Malmaison, France). For immunohistochemical detection, endogenous peroxidase was blocked by incubating sections in 3% H 2 O 2 in methanol at room temperature for 10 min. Then fixed tissues were incubated at 4 °C overnight with 2 g/ml anti-C3aR or anti-C5aR or anti-neurofilament 68 in PBS containing 0.3% Triton X-100 and 1% BSA. After several rinses in PBS, the tissues were incubated at room temperature for 2 h with peroxidase-conjugated Affinipure goat anti-rabbit or anti-mouse IgG diluted 1:1000. After several rinses in PBS, the sections were incubated at room temperature for 2 h with the peroxidase-anti peroxidase complex (Sigma) diluted 1:200 in PBS. The sections were washed twice with PBS and rinsed with 0.1 M Tris-HCl buffer. The immunoreactivity was revealed by using a 3,3Ј-diaminobenzidine substrate kit containing 0.02% H 2 O 2 (Sigma) and nickel ammonium sulfate. The reaction was stopped by removing the diaminobenzidine solution and by rinsing with a large volume of water. The specificity of immunolabeling was checked by omitting the primary antibody and by replacing the antiserum with pre-immune serum. Microphotographs were acquired on a computer-assisted image analyzer (Biocom 2000, Les Ulis, France).
Immunoprecipitation and Western Blot-Total cellular proteins were extracted from DIV 4 neurons in lysis buffer containing 0.15 M NaCl, 0.05 M EDTA, 4% CHAPS, and 0.2% of the protease inhibitor mixture (0.5 M EDTA, 2.5 M benzamidine, 2.18 mM pepstatin A, 11.7 M leupeptin) for C3aR detection and 1% Triton X-100, 25 mM Tris-HCl, 5 mM EDTA, 250 mM NaCl, 10% glycerol and 0.2% of the protease inhibitor mixture for C5aR, Bax, and Bcl-2 detections. Spleen or cerebellum of 12-day-old rat were lyophilized, and the dry powders were resuspended in the corresponding lysis buffer (10 ml per g of lyophilized tissue) and incubated overnight at 4 °C. These extracts were centrifuged (15,000 ϫ g, 4 °C, 15 min), and the supernatant was immunoprecipitated before Western blotting to enrich extracts in C3aR or C5aR proteins. Freshly made cell lysates were incubated with anti-C3aR or anti-C5aR at 4 °C for 30 min. The lysates were then incubated with protein A-Sepharose at 4 °C for 1 h under gentle rotation. After centrifugation at 10,000 g for 5 min, the supernatant was discarded. Immunoprecipitates were washed 5 times with PBS. The resulting pellet was solubilized in Laemmli sample buffer, reduced with the addition of mercaptoethanol (47) , and boiled for 5 min. The immunoprecipitate proteins were separated by 10% SDS-PAGE on 12% gels and electrotransferred to polyvinylidene difluoride membranes (Immobilon-P Millipore, Saint-Quentin en Yvelines, France). Nonspecific sites were blocked with 5% nonfat milk at room temperature for 30 min, and the membrane was incubated overnight at 4 °C with biotinylated anti-C3aR, biotinylated anti-C5aR (2 g/ml), anti-Bax (1:200, sc-493, Santa Cruz Biotechnology, CA), or anti-Bcl-2 (1:200, sc-492, Santa Cruz Biotechnology) with rocking. After washing, bands were visualized by incubation with streptavidin-horseradish peroxidase or conjugated Affinipure goat anti-rabbit IgG (1:1000) for 2 h followed by chemiluminescence detection (ECL detection kit, Amersham Biosciences).
Measurement of Calcium Flux-Cells were loaded with 4 M fluo-4AM (Molecular Probes, Interchim) in HBK buffer (120 mM NaCl, 5 mM KCl, 1.8 mM CaCl 2 , 1 mM MgCl 2 , 6 mM glucose, 10 mM HEPES, pH 7.4) for 30 min at 37 °C. After washing twice with HBK buffer, fluorescence intensity was measured with a FL600 microplate reader (Bio-Tek Instruments, Winooski, VT) at an excitation wavelength of 485 nm and an emission wavelength of 530 nm every 15 s for 6 min.
Apoptosis Induction-Cerebellar granule neurons were cultured for 4 days in SϩK25. The cells were washed twice and cultured in serum-free medium containing low (5 mM) potassium concentration (S-K5). Under these conditions cerebellar granule neurons degenerate and die by apoptotic cell death within 8 -24 h (37) (38) (39) .
Cell Viability-Cells were incubated with 1.3 M calcein AM (Molecular Probes) in PBS for 15 min. After washing twice with PBS, fluorescence intensity was measured with a FL600 microplate reader (Bio-Tek Instruments) at an excitation wavelength of 485 nm and an emission wavelength of 530 nm. Pilot experiments have shown that the fluorescence intensity is proportional to the number of viable cells (in the range 5 ϫ 10 4 to 1 ϫ 10 6 cells/ml).
DNA Fragmentation-Internucleosomal DNA cleavage was assessed by conventional gel electrophoresis after extraction of nuclear DNA by using the Wizard Plus Minipreps DNA purification system (Promega). Granule neurons were incubated for 10 min at room temperature in a lysis buffer consisting of 50 mM Tris-HCl, 10 mM EDTA, 1% Triton X-100, and 50 g/ml RNase A. After centrifugation at 14,000 ϫ g for 15 min, the cleared lysates were mixed with the Wizard resin and transferred into a vacuum manifold column. Three washes with the columnwash solution were performed, and DNA fragments were eluted with 50 l of water at 60 °C. DNA ladders were visualized on a 1.5% agarose gel.
Measurement of Caspase Activity-For measurement of caspase-3 activity, cultured cells were washed twice with PBS at 37 °C, resuspended in Dulbecco's modified Eagle's medium (100 l), and treated with the fluorometric caspase-3 assay system (Promega). In brief, caspase substrate and homogeneous caspase buffer (100 l) were mixed and added to the cells (100 l) in 96-well plates. The fluorescence intensity was measured with a Bio-Tek FL600 microplate reader (Bio-Tek Instruments) at an excitation wavelength of 485 nm and an emission wavelength of 530 nm every 15 min for 3 h. For measurement of caspase-9 activity cultured cells were washed twice with PBS at 37 °C and resuspended in PBS at 4 °C. Cells were harvested by centrifugation (350 ϫ g, 4 °C, 9 min) and treated with the fluorometric caspase-9 assay systems (R&D Systems, Minneapolis, MN). In brief, the cell pellet was resuspended in 95 l of hypotonic cell lysis buffer and incubated with 95 l of reaction buffer and caspase-9 substrate in 96-well plates. Fluorescence intensity was measured at an excitation wavelength of 360 nm and an emission wavelength of 530 nm every 15 min for 3 h.
Measurement of Mitochondrial Activity-Cultured cells were incubated in the presence of the JC-1 probe (7.5 g/ml; Molecular Probes) at 37 °C for 15 min and then washed with PBS. In viable granule neurons, the intact membrane potential allows the lipophilic dye JC-1 to enter into the mitochondria, where it accumulates and aggregates, producing an intense orange signal. In apoptotic cells, the mitochondrial membrane potential collapses so that the monomeric JC-1 probe remains cytosolic and stains the cell in green. Fluorescence intensity was measured with a Bio-Tek FL600 microplate reader and expressed as a ratio of the emission at 590 nm (orange) over 530 nm (green).
Statistical Analysis-All values are expressed in means Ϯ S.E. A one-way analysis of variance and a Tukey-Kramer multiple comparisons test were used to determine statistical differences between mean values.
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5

Avian Reovirus Isolation and Characterization

For virus isolation, the gut and tendon specimens were homogenized individually in sterile PBS solution. The supernatants of centrifuged homogenates were filtered using 0.45 µm PES syringe filters and then inoculated on chicken hepatocellular carcinoma cell line LMH (Leghorn male hepatoma, ATCC CRL-2117) in the presence of DMEM (Lonza), 5% fetal bovine serum (Gibco) and 1% antibiotic/antimycotic solution (Lonza). Virus culturing was carried out at 37 °C with a constant supply of 5% carbon dioxide. Giant cell formation, as typical cytopathogenic effect (CPE) of TRVs, was the primary endpoint of virus isolation. When CPE was not seen following 5–6 days post-inoculation, three blind passages were carried out [17 (link)].
Virus isolation results were confirmed by RT-PCR amplification and sequencing of the σC-coding gene when CPE was seen. In brief, cell culture supernatants were used to extract viral RNA (Direct-zol RNA Miniprep; Zymo Research). A home-made avian reovirus σC gene-specific RT-PCR assay using the QIAGEN One-Step RT-PCR Kit was carried out with published primers (S1_all_F3 (Fw) 5′-GATACTSTCNTTGACTTCGA-3′ and S1_all_R2 (Rev) 5′-TCGATGCCSGTACGCACGGT-3′) to obtain a ~900 nucleotide (nt) long fragment of the S1 genome segment [17 (link)]. Gel-extracted bands were subjected to Sanger sequencing with the BigDye Terminator v3.1 Cycle Sequencing Kit. The sequence chromatograms were generated on an ABI PRISM® 3100-Avant Genetic Analyzer (Delta Bio 2000 Ltd., Gödöllő, Hungary).
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