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Emulsiflex c3

Manufactured by Avestin
Sourced in Canada, Germany

The EmulsiFlex-C3 is a high-pressure homogenizer designed for the continuous processing of liquid samples. It utilizes a patented design to generate intense shear forces and cavitation for effective emulsification, dispersion, and size reduction of particles within the sample.

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149 protocols using emulsiflex c3

1

Purification of InvC Protein from Salmonella

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p‐invCΔ79 encodes the amino acids from 80 to 431 of the protein InvC from Salmonella typhimurium in fusion with a C‐terminal Strep‐tag. The construct was engineered by gene amplification from genomic DNA and ligated using BsaI restriction sites into the pASK‐IBA3+ vector (IBA GmbH, Göttingen, Germany). Escherichia coli BL21 (DE3) transformed with p‐invCΔ79 was grown to mid exponential phase at 37°C in LB medium (Luria/Miller) containing ampicillin and induced with 200 μg L−1 anhydrotetracycline (Sigma‐Aldrich, St. Louis, MO). Cells were harvested after 18 hr of expression at 20°C, resuspended in buffer B1 (100 mM Tris pH 7.5, 150 mM NaCl), lysed using the cell disruptor EmulsiFlex‐C3 (AVESTIN, Ottawa, ON, Canada), and centrifuged at 48,000g for 30 min. InvCΔ79 was pulled down by Strep‐Tactin affinity chromatography (IBA GmbH, Göttingen, Germany) and eluted with buffer B1 supplemented with 7.5 mM desthiobiotin. The protein product was further purified by SEC on a Superdex 200 10/300 GL column (GE Healthcare, Chicago, IL) equilibrated with buffer B2 (50 mM Tris pH 8.0, 100 mM NaCl, 1 mM EDTA, and 1 mM DTT). Fractions containing InvCΔ79 were identified by sodium dodecyl sulfate‐polyacrylamide gel electrophoresis and dialyzed overnight at 4°C against buffer B3 (10 mM Tris pH 8.5, 10 mM NaCl, and 1 mM DTT).
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2

Recombinant NanK Protein Expression

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The gene encoding F. nucleatum NanK was synthetically generated (GeneArt) and cloned into a pET300 NT/DEST expression vector containing an N-terminal His tag. The recombinant protein was expressed in E. coli BL21(DE3) cells (Novagen). The cells were grown at 37°C in Luria broth (LB) medium supplemented with 100 µg ml−1 ampicillin until they reached mid-log phase (OD600 = ∼0.5–0.7). The cells were induced with 0.2 mM isopropyl β-d-1-thiogalactopyranoside (IPTG) and were grown at 20°C for a further 18 h. The cells were harvested by centrifugation at 5000g for 30 min and were resuspended in buffer A [20 mM Tris–HCl pH 8.0, 300 mM NaCl, 10 mM imidazole, 5%(v/v) glycerol].
The cells were disrupted using an EmulsiFlex-C3 (Avestin) at 124 MPa for two cycles. The cell debris was removed by centrifugation at 107 000g for 30 min at 4°C. Macromolecule-production information is summarized in Table 1.
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3

Optimized Extraction of Recombinant Protein

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For extraction of the product remaining inside the cells, the biomass pellets were resuspended in 30 ml TE buffer (100 mM TRIS, 10 mM EDTA, pH 7.4), with the exception of the reference sample, which was processed as the original cell suspension in the culture broth. The suspension was homogenized in a high-pressure homogenizer (Emulsiflex C-3; Avestin, Ottawa, Canada) in three passages at 1,000 bar, which are optimal parameters for extraction of soluble product from E. coli according to Pekarsky et al. (2019) (link). The homogenate was then centrifuged at 10,000 rcf (10 min, 4°C) to separate the cell debris from the soluble extract. SpA concentrations in the extracts from homogenization (intracellular, cSpA,in) and from the PEF extract (extracellular, cSpA,ex) were then quantified in triplicate via reversed phase HPLC (Thermo Fisher Scientific, Waltham, MA, United States) using a polyphenyl column (Waters, Milford, MA, United States). The mobile phase consisted of a gradient of water and acetonitrile, supplemented with 0.1% trifluoroacetic acid. The released SpA (%) was then calculated according to Eq. 3.
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4

Optimized Cinnamon Extract Emulsions

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To prepare the base system, a high-water content (W/O of 40/60, v/v), and an emulsifier content of 6% (total emulsion-basis, % (v/v)), were chosen. Three emulsifier systems were tested, namely S80:T80 54:46 (v/v), S80:T80 80:20 (v/v), and S85:T80 80:20 (v/v). The chosen compositions and contents were based on previous published works [7 (link),22 (link),23 (link)]. The preparation method, developed in-house, comprised, firstly, the preparation of a primary emulsion, followed by the application of successive HPH cycles (12, 21, and 24). The primary emulsion comprised the addition of the emulsifier mixture to the water phase for homogenization (10 min under stirring) followed by the addition of the oil phase and homogenization using a Unidrive X1000 Homogenizer Drive (CAT Scientific, Germany) at 11,000 rpm for 5 min. An aliquot of this primary emulsion was withdrawn for microscopic analysis. Afterwards, the primary emulsion was subjected to successive HPH cycles using an EmulsiFlex-C3 (Avestin, Canada) at 1500 bar.
To prepare the emulsions loaded with the cinnamon (Cinnamomum zeylanicum) aqueous extract, the extract (1.25%, 2.5%, 3.75%, and 5%; w/v; water-basis) was previously dissolved in the water phase before adding the emulsifier mixture. The following steps were as previously described for the base emulsion preparation.
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5

Mutagenesis and Purification of J30 Protein

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The A98C, G114C and Y143H mutations were introduced at the DNA level into plasmid pBIL-J30 using the QuikChange Lightning Multi Site-Directed Mutagenesis Kit (Agilent Technologies, catalog No. 210515).
Wild-type J30 (J30 wt) and J30 CCH, each carrying a C-terminal polyhistidine tag, were produced in Escherichia coli NEB Express cells grown in TB medium with 50 µg ml−1 kanamycin and 2 mM MgSO4 at 200 rev min−1. The bacterial suspensions were incubated at 37°C before induction with 0.5 mM IPTG at an OD600 nm of 4 (J30 wt) or 1 (J30 CCH) and at 20°C thereafter. The protein expressions lasted 17 h (J30 wt) or 19 h (J30 CCH) until an OD600 nm of 20 (J30 wt) or 20.5 (J30 CCH) was attained.
The cells were lysed in a buffer consisting of 0.15 M NaCl, 25 mM HEPES pH 7.4 with 1 mM PMSF using an Avestin EmulsiFlex-C3 homogenizer. The proteins were purified using an ÄKTAexplorer 100 Air by nickel-affinity (5 ml HisTrap HP or FF) and size-exclusion chromatography (Superdex 200 10/300 GL, all from GE Healthcare Life Sciences). All of the media and buffers used to produce and isolate J30 CCH also contained 10 µM ZnCl2.
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6

Membrane Protein Extraction and Purification

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The cell pellet was resuspended in lysis buffer (30 mM TrisHCL pH 7.5; 300 mM NaCl; 10% glycerol, 2 mM MgCl2, 2 µg/ml DNase I; 200 µg/ml lysozyme). The cells were lysed by passing three times through an EmulsiFlex-C3 (Avestin); the lysate was centrifuged (25000 × g; 30 min; 6 °C) supernatant was taken and spun again at 150000 × g; 1 h; 6 °C. The membrane pellets were collected and resuspended in high salt buffer (30 mM TrisHCl pH 7.5 800 mM NaCl; 10% glycerol) and ultracentrifuged (150000 rcf; 1:35 h; 6 °C). Membrane pellets were resuspended in 30 mM TrisHCl pH 7.5; 300 mM NaCl, 10% glycerol, flash frozen in liquid nitrogen and stored at −20 °C. Protein was solubilized by adding 1% DDM and followed by centrifugation at 50000 rcf for 30 min at 6 °C. Solubilized protein was first purified by a nickel-IMAC beads in a gravity column; washed with 10 mM and 30 mM imidazole in 30 mM TrisHCl pH 7.5; 300 mM NaCl, 10% glycerol; 0.03% DDM, and eluted with 250 mM imidazole. Elution fractions containing the protein were concentrated and loaded onto a gel filtration 10/300 S200 column in 20 mM HEPES pH 7.4, 150 mM NaCl and 0.03% DDM. Fractions containing the protein (5 ml) were concentrated in an Amicon® Ultra 4 ml centrifugal filter devices (50 kDa MWCO) to 0.5 ml, final concentration of 9 mg/ml and stored at 4 °C.
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7

Purification of Membrane Protein Complexes

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The cell pellet was resuspended in lysis buffer (30 mM TrisHCL pH 7.5; 200 mM NaCl; 5% glycerol, 2 mM MgCl2, 2 µg/mL DNase I; 200 µg/ml lysozyme). The cells were lysed by passing three times through an EmulsiFlex-C3 (Avestin); the lysate was centrifuged (25000 × g; 30 min; 6 °C) supernatant was taken and spun again at 150000 × g; 1 h; 6 °C. The membrane pellets resuspended in buffer (30 mM TrisHCl pH 7.5; 200 mM NaCl, 5% glycerol), flash frozen in liquid nitrogen and stored at −20 °C. Protein was solubilized by adding 1% DDM and followed by centrifugation at 50000 rcf for 30 min at 6 °C. Solubilized protein was first purified by nickel-IMAC in a gravity column; washed with 40 mM imidazole in 30 mM TrisHCl pH 7.5; 200 mM NaCl; 5% glycerol; 0.03% DDM and eluted with 300 mM imidazole. Eluted fractions were combined with 1 mg of TEV protease/mg of protein to perform the His-tag cleavage during dialysis overnight at 4 °C. Protein solution was added to gravity nickel-NTA column to perform a reverse IMAC; the flow-through was collected, concentrated and loaded onto a gel filtration 10/300 S200 column in 20 mM HEPES pH 7.4, 150 mM NaCl and 0.03% DDM. Fractions containing the protein were concentrated in an Amicon® Ultra 4 ml centrifugal filter devices (100 kDa MWCO) to a final concentration of 2.5 mg/ml and stored at 4 °C.
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8

Recombinant A2A Receptor Expression and Purification

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An N-terminal His-tagged A2AR was expressed in Pichia pastoris as described previously [18 ]. The receptor sequence terminated at Ala316 (Fig. S1) as this construct is degradation resistant [25 (link)] and has been used extensively in structural studies, having wild-type pharmacology [26 (link),27 (link)]. Prior to SMA-extraction, cells were disrupted following suspension in breaking buffer (50 mM sodium–phosphate buffer, 100 mM NaCl, 5% glycerol, EDTA-free protease inhibitor, pH 7.5, 4 °C) by 3–5 passes using an Avestin Emulsiflex C3 cell-disrupter. Unbroken cells and debris were removed by centrifugation (5000 ×g, 10 min, 4 °C). The A2AR-expressing membrane fraction was then sedimented (100,000 ×g, 60 min, 4 °C) and re-suspended to 80 mg ml−1 (wet weight) in extraction buffer (300 mM NaCl, 20 mM HEPES, pH 7.5). Membranes were stored at −80 °C until needed.
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9

Expression and Purification of MDA5ΔN and T7 Polymerase

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Mammalian expression plasmids for RIG-I and MDA5 and the bacterial expression plasmid for MDA5ΔN (residue 287–1025) were described previously (24 (link)). Protocols to express and purify MDA5ΔN was reported in (25 (link)). Briefly, the protein was expressed in BL21(DE3) at 20°C for 16–20 h following induction with 0.5 mM IPTG. Cells were lysed by high pressure homogenization using an Emulsiflex C3 (Avestin), and the protein was purified by a combination of Ni-NTA and heparin affinity chromatography and size exclusion chromatography (SEC) in 20 mM HEPES, pH 7.5, 150 mM NaCl and 2 mM DTT. T7 polymerase was expressed in BL21(DE3) using the plasmid pT7–911Q. The T7 pol protein was purified by Ni-NTA followed by size exclusion chromatography (SEC) in 50 mM Tris, pH 7.5, 100 mM NaCl and 1 mM EDTA, and stored in 50% glycerol.
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10

Purification of GB1 Protein

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The GB1 purification was a
composite of previously described protocols. Briefly, GB1 (in a pET-11a
vector) was expressed in BL21-gold (DE3) (Agilent Technologies, Santa
Clara, CA) E. coli host cells. The
cells were resuspended in 100 mM sodium phosphate, pH 7.4, disrupted
by two passes through an EmulsiFlex-C3 (Avestin, Inc., Ottawa, ON),
and centrifuged for 1 h at 20 000 rpm in a 70 Ti Rotor (Beckman
Coulter) at 4 °C. The supernatant was then placed for 5 min in
a water bath set at 80 °C followed by 10 min on ice. The precipitate
was removed by centrifugation as described above, and the supernatant
was loaded onto a Q-Sepharose FF column (GE Healthcare). The flow
through was diluted 5-fold and reloaded onto the column. GB1 was eluted
with a linear gradient of 0–1 M NaCl in 20 mM Tris–HCl,
pH 7.5. The GB1 containing fractions were pooled and concentrated,
and the protein was further purified on a HiLoad 26/600 Superdex 75
column (GE Healthcare) equilibrated in 20 mM Tris–HCl. The
protein, which was pure as shown by Coomassie blue stained SDS-PAGE,
was characterized by CD, mass spectroscopy, and fluorescence emission
spectra.
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