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343 protocols using axio imager a1

1

Venom-Induced Lung Inflammation Evaluation

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S. plumieri venom was injected in the intraplantar region of the hind foot paw of mice (n = 4–7) according to Boletini-Santos et al. [30 (link)]. After 24 h, mice were euthanized with an i.p. pentobarbital injection (60 mg/kg; Sanofi, Libourne, France), the chest wall was opened, and the tracheas were cannulated to obtain bronchoalveolar lavage fluid (BAL). The collected BAL was centrifuged (170× g for 10 min at 20 °C), and the resulting cell pellet was then resuspended in 1 mL of PBS. Cell counts were performed using a hemocytometer, and cytocentrifuge (Cytospin II; Shandon, Cheshire, UK) slides were stained (Hema 3, Scientific Products, Chicago, IL, USA). For differential cell counts, 300 leukocytes were enumerated and identified as macrophages on the basis of staining and morphologic characteristics using a conventional light microscope (Axio Imager A1, Carl Zeiss, Germany). Paraffin-embedded sections of the left lung were stained with hematoxylin and eosin (H&E). All slides were examined with light microscopy at a magnification of 10 or 40× (Axio Imager A1, Carl Zeiss, Germany).
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2

Immunohistochemical Analysis of Galectin-1 in Trichinella spiralis Muscle Larvae

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Live T. spiralis muscle larvae were fixed in cold ethanol and xylene and embedded in paraffin for histological analysis. Five-micron sections were deparaffinized in xylene, rehydrated with a graded alcohol series, washed and incubated with rabbit anti-human galectin-1 affinity-purified polyclonal antibody (1:1000) (Institute for the Application of Nuclear Energy - INEP, Belgrade, Serbia), overnight at 4 °C. After washing, sections were incubated with FITC-conjugated anti-rabbit IgG secondary antibody (1:1500) (Molecular probes, Thermo Fisher scientific, Waltham, MA, USA) or with biotin-labeled goat anti-rabbit IgG secondary antibody (1:500) (Vector Laboratories, Burlingame, CA, USA), for 1 h at room temperature (RT). Non-specific binding was assessed by omitting the anti-human galectin-1 incubation step. Indirect immunofluorescence (IIF) staining was examined by ultraviolet microscopy (AXIO Imager A1, Carl Zeiss AG, Goettingen, Germany). Incubation with biotin-labeled goat anti-rabbit IgG was followed by ABC (avidin/biotinylated horseradish peroxidase complex, Vector) (1:1000) for 30 min, and the reaction was developed by adding the chromogenic substrate. The stained sections were viewed using light microscopy (AXIO Imager A1, Carl Zeiss AG).
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Histological Analysis of Tuberculosis Granulomas

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Liver fragments were fixed in 10% neutral formalin, dehydrated in ascending alcohol solutions, and embedded in paraffin. Sections (4-5 μm thick) were stained using the hematoxylin/eosin techniques and studied using light microscopy (AxioImager A1, Carl Zeiss). Specific histochemical staining by the Ziehl-Neelsen stain was used to visualize Mycobacterium bovis in the tissues. The numerical density of the granulomas and their diameters were determined by using the morphometry method (AxioVision software, rel. 4.8). These parameters were used as the morphological criteria for tuberculosis activity.
For immunohistochemical study, 3 μm sections were dewaxed and dehydrated, and epitopes were retrieved in citrate buffer solution in a 700 W microwave oven for 20-35 minutes. Endogenous peroxidase was blocked. The samples were incubated with primary anti-Nrf2 antibodies according to instructions. Then, the sections were incubated with horseradish peroxidase (HRP) conjugate (using a Spring Bioscience Corporation detection system) and 3,3′-diaminobenzidine (DAB) substrate and then stained with Mayaer's hematoxylin. Sections were dehydrated using increasing concentrations of ethanol and xylol mounted with synthetic mounting media “Bio Mount,” placed under cover glasses and studied using light microscopy (AxioImager A1, Carl Zeiss).
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Histopathological Analysis of Formalin-Fixed Tissues

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Tissues were fixed in 10% neutral formalin for 24 h, and then transferred to 70% ethanol. Samples were embedded in paraffin, sectioned and stained with hematoxylin and eosin. Histopathological examination was performed using Zeiss AxioImager A1 with Axiocam MRc digital camera (Thornwood, NY). In determining the diagnosis the guidelines of Bethesda classification was used (Morse et al., 2002 (link)). Pictures were taken using Zeiss AxioImager A1 with Axiocam MRc digital camera.
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5

High-Resolution Fluorescent Imaging Protocol

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The high-resolution fluorescent images of Rim23-GFP were captured using a Delta Vision Elite deconvolution microscope equipped with a Coolsnap HQ2 high resolution charge-coupled-device (CCD) camera. All other differential interference (DIC) and fluorescent images were captured using a Zeiss Axio Imager A1 fluorescence microscope equipped with an AxioCam MRM digital camera.
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6

Histological Analysis of Mouse Liver

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After completion of the experiment mouse livers were fixed in 10% neutral formalin for 24 h. For morphological observations samples were transferred to 70% ethanol and processed in an automated processor (Leica ASP 300) and embedded in paraffin using LEICA EG 1150H embedding unit according to manufacturer's protocols. Five micron sections were obtained using rotary microtome (LEICA RM 2235) and stained with hematoxylin and eosin (H&E). Neutral lipids were revealed by Oil Red O staining according to standard protocol on 12 micron cryo-sections prepared from formalin-fixed material using CM1900 cryostat. Histopathological examination was performed using Zeiss AxioImager A1 with Axiocam MRc digital camera.
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7

Quantification of Cell Populations

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Quantification of cell population estimates were made using a brightfield microscope (Zeiss Axio Imager A1) as previously described [58 (link), 65 (link)]. All stereological cell counts were performed blind to genotype and age.
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Embryo Clearing and Imaging Protocols

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For embryo phenotyping, embryos were cleared at mentioned stages in a chloral hydrate solution (chloral hydrate/water/glycerol, 8/3/1, w/v/v). Microscopy observations were done on a Zeiss Axioskop2 plus coupled to an AxioCam MRc camera, or an Olympus BX51 microscope, coupled to a Sony DS-5M-L1 camera, using differential interference contrast optics. For fluorescent visualization, ovules were mounted in 10% glycerol or 7% glucose with or without 0.1 mg/mL propidium iodide. Imaging was done on a Zeiss Axio Imager A1 coupled to an AxioCam MRm camera (wide-field fluorescence) or on a Zeiss LSM 700 or a ZEIS LSM 780 based on Zeiss Axio Observer Z1 microscopes, and a Zeiss LSM 700 based on a Zeiss Axio Imager Z2 microscope (confocal fluorescence). Acquisition with multiple channels was done by sequential scanning using 488 nm (GFP, YFP, propidium iodide) and 550 nm (TdTomato) with 505-530nm band pass (GFP, YFP) and 530-600 band pass (propidium iodide, TdTomato) emission filters.
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9

Angelicin Induces Apoptosis: TUNEL Assay

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For the detection of apoptosis, TUNEL assay was performed, according to the manufacturer's protocol. Cells (1×105) were cultured on coverslips and after 24 h, treated with angelicin for different time periods (HepG2 cells 48 h and Huh-7 36 h). The cells were harvested and fixed with 4% paraformaldehyde in PBS for 45 min at room temperature, then permeabilized with 0.25% Triton X-100 in PBS for 20 min at room temperature. Subsequently, TUNEL assay was performed according to the manufacturer's protocol and nuclei were stained for 6 min at room temperature with DAPI. Stained cells were observed under an Axio Imager A1 fluorescence microscope (Zeiss AG, Oberkochen, Germany).
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10

DNA Damage Quantification in Irradiated Cells

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Irradiated IN528 cells were subjected to alkaline and neutral comet assays (single-cell gel electrophoresis) for detecting DNA single- and double- strand breaks, respectively, as previously described32 . In brief, irradiated cells were washed with PBS and mixed with low melting agarose (1:10), before being loaded onto microscope slides. Cell lysis was performed at 4 °C (alkaline comet assay) or 37 °C (neutral comet assays). After electrophoresis for 25 minutes at room temperature, DNA was stained with propidium iodide and imaged with an AxioImager A1 fluorescence microscope (Zeiss) equipped with an AxioCam 506 CCD camera (Zeiss). The cell number with DNA comets and the DNA percent content in comet tail region were measured using ImageJ and OpenComet 1.3 software (three assays, each with about 200 cells analyzed).
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