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23 protocols using «q125 sonicator»

1

Synthesis of Piezoelectric Polymer Nanoparticles

2024
PNPs were prepared according to the protocol previously reported by our group.[34 (link)
] Specifically, 20 mg of P(VDF‐TrFE) (FC45, Piezotech) were dissolved in acetone (Sigma Aldrich) at a concentration of 5 μg mL−1. This solution was slowly dripped using a 0.7 mm needle into a tween‐80 (Sigma‐Aldrich) water solution (0.2% w/v, 9 mL) under moderate stirring (350 rpm); the solution was left under stirring for 2 h at room temperature. It was then collected, avoiding the recovery of aggregates at the bottom, and sonicated for 10 min in an ice bath (amplitude 70%) using an ultrasonic tip (Fisherbrand Q125 Sonicator). To remove acetone and, partially, tween‐80, five washes were performed in MilliQ water with Amicon centrifuge filters (Ultra‐4 Centrifugal Filter Unit, MWCO 100 kDa, Sigma‐Aldrich) at 4000 g for 10 min at 25 °C. Finally, the particles were resuspended in sterile MilliQ water and filtered through a 1.2 μm filter to remove aggregates.
For fluorescent PNP synthesis, 10 μL of VybrantTM DiO (Invitrogen) were added to the initial acetone solution (4 mL).
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2

Immunoblotting and Co-Immunoprecipitation Assay

2023
Whole-cell protein extracts were prepared in cold cell-lysis buffer (100 mM NaCl, 30 mM Tris-HCl pH 7.6, 1% Triton X-100, 20 mM sodium fluoride, 1mM EDTA, 1mM sodium orthovanadate, and 1x Halt protease inhibitor cocktail). Proteins were transferred to nitrocellulose membranes. Following incubation with the blocking buffer (5% non-fat milk in 1x TBS-T) for 1 h at RT, membranes were incubated with primary antibodies (1:1,000 dilution in the blocking buffer) overnight at 4°C. After washing with 1xTBS-T for 3 times, membranes were incubated with peroxidase-conjugated secondary antibodies (1: 5000 diluted in the blocking buffer) at RT for 1 h. Signals were detected using SuperSignal West chemiluminescent substrates. For normal Co-IP, 1 mg whole cell lysates were incubated with primary antibodies at 4°C overnight. Either normal rabbit IgG were used as the negative controls. Protein G magnetic beads were used to precipitate primary Abs. After washing with the lysis buffer for 3 times, beads were boiled in 1x loading buffer for 5 min before loading on SDS-PAGE. Chemiluminescent signals were captured by an iBright FL1000 imaging system (ThermoFisher Scientific).
For co-IP of endogenous c-MYC and HSF1, proteins were extracted using a QSonica Q125 sonicator (total process time: 15S, pulse-on time: 5S, pulse-off time: 10S, output intensity: 30%) in 1x sonication buffer (20 mM Tris, 20 mM NaCl, 1 mM EDTA, 20 mM β-glycerol-phosphate, 20 mM sodium fluoride, 4 mM sodium orthovanadate, and 1 mM DTT pH7.4, supplemented with Halt protease inhibitor cocktail). Total 5–8 mg of lysates were used for co-IP using either rabbit anti-MYC (E5Q6W) or anti-HSF1 (D3L8I) antibodies. Mouse anti-rabbit IgG light-chain specific (D4W3E) HRP conjugates were used for immunoblotting detection. To detect MAX, a goat anti-MAX antibody was used. For the co-IP with E-box oligos, 5 mg of lysates were incubated with 6μM various unlabeled E-box oligos with rotation at RT for 1 h. IgG or anti-MYC (E5Q6W) antibodies (1 μg) were added to the lysates and incubated at 4°C overnight with rotation.
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3

Doxorubicin-Loaded Cell Membrane-Coated Boron Nitride Nanoparticles

2023
HMC3 (ATCC, CRL-3304) microglial cells were maintained
in minimum essential medium (MEM, Gibco), supplemented with 1% v/v
penicillin-streptomycin (P/S, Gibco) and 10% v/v fetal bovine serum
(FBS, Gibco), while U87-MG cells (ATCC, HTB-14) were maintained in
Dulbecco’s modified Eagle’s medium (DMEM, Gibco), supplemented
with 1% v/v P/S, 1% v/v l-glutamine, and 10% v/v FBS. Cell
MEMbrane coating and doxorubicin (Dox) loading were achieved as previously
described in a previous report.18 (link) Briefly,
HMC3 and U87-MG cells were separately cultured in 10 cm diameter Petri
dishes, and when they reached 90% confluence, they were detached with
a cell scraper and centrifuged at 600g for 5 min.
The pellets were washed three times with phosphate buffer saline solution
(PBS), resuspended in cold Milli-Q water, and then kept on ice. 5
× 106 cells were disrupted with a high-pressure homogenizer
with a 138 kPa homogenizing pressure. Thereafter, the samples were
centrifuged at 10000g for 10 min; the supernatants
were further centrifuged at 37000g for 60 min to
collect cell MEMbrane pellets, and finally resuspended in 1 mL of
Milli-Q water.
To obtain cell MEMbrane-coated h-BNs (CMC-h-BNs), 5 mg of h-BNs
(BeDimensional, Italy)19 (link) was added in 5
mL of cell MEMbrane extract (derived from 25 × 106 HMC3 cells and 25 × 106 U87-MG cells). The dispersion
was sonicated by using an ultrasonic tip (Fisherbrand Q125 Sonicator)
for 20 min at 40% amplitude of power in an ice bath and then centrifuged
at 10000g for 15 min at 4 °C. CMC-h-BNs were obtained after three rinses with Milli-Q water.
Dox-loaded h-BNs were prepared by sonicating 5
mg of h-BNs and 100 μg of Dox (Sigma-Aldrich)
in 5 mL of Milli-Q water for 20 min at 40% amplitude of power in an
ice bath and then kept at room temperature for 4 h. After incubation,
Dox-loaded h-BNs were obtained by centrifuging at
10000g for 15 min and washing three times to remove
nonattached Dox. To obtain Dox-loaded and cell-MEMbrane-coated h-BNs (Dox-CMC-h-BNs), cell MEMbrane coating
was performed as described for bare CMC-h-BNs. A
representation of the Dox-CMC-h-BNs preparation is
depicted in Schema 1. Dox loading in Dox-CMC-h-BNs was indirectly calculated
by measuring the free Dox present in the aqueous phase upon nanovector
preparation. All the supernatants were collected after washing steps
and were analyzed by a spectrofluorometer (Agilent Technologies Cary
Eclipse; λex = 470 nm; λem = 590
nm), exploiting a standard curve (Figure S1A).
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4

Membrane-Coated Magnetic Nanoparticles

2023
An amount of 1 mL of CM extract derived from 5 × 106 cells was used to coat 2 mg of L-SSH MNPs dispersed in Milli-Q water
(2 mg/mL). The membrane coating was attained through ultrasonic high
power (25 W) treatment (20 kHz, Fisherbrand Q125 Sonicator, FisherScientific)
with intermittent pulse timing mode (2 s pulse, 30 min) in an ice
bath. The sample was thereafter washed three times with deionized
water and susequently collected by centrifugation (16000g, 90 min, 4 °C). The pellet was eventually disersed in 1 mL
of Milli-Q water and the final product indicated as CM-L-SSH.
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5

Preparation and Characterization of Cell-Derived Magnetic Nanovectors

2023
The preparation of the magnetic MNVs was performed by following a procedure optimized from a previous work.[20 (link)
] Briefly, 17.5 mg of 1‐stearoyl‐rac‐glycerol (GMS, Sigma‐Aldrich) and 2 mg of DPPC (Sigma‐Aldrich) were mixed with 500 µL of a 10 mg mL−1 solution of IONPs in chloroform and heated at 70 °C. 3 mL of an aqueous solution (1.0 wt%) of Tween 80 (Sigma‐Aldrich), previously heated at 70 °C, were added to the melted lipid/IONPs mixture; the dispersion was then vortexed and sonicated for 10 min (amplitude 90%) with an ultrasonic tip (Fisherbrand Q125 Sonicator). MNVs were cooled down at 4 °C for 30 min and purified by centrifugation (16 000 g, 90 min, at 4 °C for three times), and finally redispersed in Milli‐Q water (Millipore). Thereafter, MNVs were coated with CM extracted from patient cells to obtain CDMNVs. Around 5 mg of MNVs were mixed with five pellets (deriving from about 2.4 × 106 cells) of CM extracts in 3 mL of sterile Milli‐Q water. The dispersion was sonicated with an ultrasonic tip for a total of 20 min at 20% amplitude (in “pulse” mode: 59 s ON, 20 s OFF) in an ice bath to avoid thermal denaturation and defolding of membrane proteins. Thereafter, CDMNVs were purified by three steps of centrifugation (16 000 g, 90 min, 4 °C) and finally redispersed in Milli‐Q water.
Nanovectors coated with deproteinated cell membrane extracts (CD*MNVs) were prepared following the same procedure. Drug‐loaded nanovectors (Reg‐CDMNVs) were synthesized by adding and 1 mg of regorafenib (MedChemExpress) to the initial lipid mixture. Nanovectors labeled with fluorescent Vybrant DiO cell‐labeling dye (Invitrogen) were analogously prepared, with the addition of 10 µL of dye in the lipid mixture.
The concentrations of the nanovector dispersions were assessed by weighting the dried pellets of known volumes of each dispersion upon freeze‐drying.
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Top 5 protocols citing «q125 sonicator»

1

Fabrication of Lipid-Magnetic Nanovesicles

25 mg of 1-stearoyl-rac-glycerol (Sigma-Aldrich), 2.5 mg of oleic acid (Sigma-Aldrich), 2.5 mg of 1,2-dipalmitoyl-rac-glycero-3-phosphocholine (Sigma-Aldrich), 4 mg of mPEG-DSPE5k (Sigma-Aldrich), and 2.5 mg of temozolomide (Sigma-Aldrich) (when TMZ-LMNVs are fabricated), are mixed with 84.5 μl of an ethanol solution of superparamagnetic iron oxide nanoparticles (15 wt%; US Research Nanomaterials Inc.), inside a 6 ml glass vial. Subsequently, the vial is placed inside an ultrasonic bath (Elmasonic S 35w) set at 70 °C in order to melt the lipids and to allow ethanol to evaporate. After ethanol evaporates, 3 ml of a pre-warmed (70 °C) Tween® 80 (Sigma-Aldrich) solution (1.0 wt%) were added to the lipid mixture and immediately sonicated using an ultrasonic homogenizer (Fisherbrand™ Q125 Sonicator) for 15 min (amplitude 30%, 120 W). After the ultrasonic homogenization, the hot mixture is transferred to a high pressure homogenizer (HPH, EmulsiFlex-B15 from Avestin), where the sample is further homogenized by passing it 5 times through the homogenizer at a pressure of 100 000 psi. After the homogenization, the LMNVs are placed for 30 min at 4 °C to allow the lipid-based structures to stabilize. The LMNVs are purified by centrifugation and washing with ultrapure (Mili-Q) water (3 times for 30 min at 4 °C).
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2

Hybrid Piezoelectric Nanoparticles for Drug Delivery

Hybrid lipid-polymeric piezoelectric nanoparticles were synthesized by following a procedure adapted from a previous work by Xiao et al. [28 (link)]. Briefly, 2 mL of P(VDF-TrFE) (45:65, Piezotech) (5 mg/mL) and 200 μL of a solution of nutlin-3a (Nut, 5 mg/mL, Sigma Aldrich) in acetone (Sigma Aldrich) were quickly injected with a syringe into 4.5 mL of an aqueous dispersion containing DSPE-PEG (1 mg/mL, Nanocs) under vigorous stirring. The above mixture was sonicated for 10 min in an ice bath (amplitude 70%) using an ultrasonic tip (Fisherbrand™ Q125 Sonicator), and then let under agitation for a few hours to evaporate the majority of the organic solvent. Afterward, the mixture was purified with Am-icon® centrifuge filters (Ultra-4 Centrifugal Filter Unit [MWCO 100 kDa], Sigma-Aldrich) at 2460 g for 15 min at 15°C. The process was repeated three times, and each time the pellet was redispersed in 4 mL sterile MilliQ water.
The recrystallization of the polymeric core was performed by refluxing the nanoparticles at 90°C, above the Curie temperature of P(VDF-TrFE), for 60 min, and then cooling down to room temperature at 1 °C/min. At the end of the reflux procedure, a total of 1 mg DSPE-PEG or DSPE-PEG/DSPE-PEG-maleimide (1/1) was added to further stabilize the nanoparticles, subsequently sonicated for 10 min (amplitude 70%) using an ultrasonic tip (Fisherbrand™ Q125 Sonicator). The lipid in excess was removed by three centrifugation steps with Amicon® centrifuge filters (Ultra-4 Centrifugal Filter Unit [MWCO 100 kDa], Sigma-Aldrich) at 2460 g for 15 min at 15°C.
For the functionalization, 200 μL of a 2 mg/mL aqueous solution of a peptide corresponding to the 141-150 residues of apolipoprotein E (ApoE) (GenScript) were added to 4 mL of the nanoparticles (2 mg/mL), and let under agitation at 4°C for 4 h. Thereafter, functionalized P(VDF-TrFE) nanoparticles (PNPs) were centrifuged 3 times with Amicon® centrifuge filters (Ultra-4 Centrifugal Filter Unit [MWCO 100 kDa], Sigma-Aldrich) at 2460 g for 15 min at 15°C to remove unreacted peptide chains.
Empty nanoparticles were prepared following the same protocol, without dissolving nutlin-3a in the initial polymer/acetone solution.
Fluorescent nanoparticles were prepared in the same way, but adding 5 μL of fluorescent Vybrant™ DiO cell-labeling dye (Invit-rogen) to the 2 mL polymer/acetone solution before mixing it with the lipid aqueous dispersion.
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3

Lipid-based Magnetic Nanovectors Synthesis

Lipid-based magnetic nanovectors (LMNVs) were synthesized similarly to a previous work.17 In brief, 25 mg of 1-stearoyl-rac-glycerol (GMS, Sigma-Aldrich), 2.5 mg of oleic acid (Sigma-Aldrich), 2.5 mg of 1,2-dipalmitoyl-rac-glycero-3-phosphocholine (DPPC, Sigma-Aldrich), 2 mg of mPEG-DSPE (5000 Da, Nanocs, Inc.), 2 mg of NHS-PEG-DSPE (5000 Da, Nanocs, Inc.), and 1 mg of nutlin-3a (Sigma-Aldrich) were mixed with 84.5 μL of an ethanol solution of SPIONs (15 wt %, US Research Nanomaterials, Inc.), inside a 6 mL glass vial. The above mixture was heated at 70 °C to melt the lipids. Then, 3 mL of a Tween 80 (Sigma-Aldrich) aqueous solution (1.0 wt %) at 70 °C was added to the lipid mixture, vortexed for 1 min, and sonicated for 20 min (amplitude 90%) using an ultrasonic tip (Fisherbrand Q125 Sonicator). LMNVs were cooled down at 4 °C for 30 min and then purified by centrifugation (16 000g, 90 min, 4 °C) and redispersed in Milli-Q water (Millipore) three times. Plain LMNVs were synthesized as described above, but without adding nultin-3a to the lipid mixture. Lipid-based nanovectors without SPIONs (LNVs) have been prepared as required for the NMR characterization, following the same procedure but without the addition of magnetic nanoparticles.
For functionalization, 100 μL of an angiopep-2 (Selleckchem) solution in water (1 mg/mL) was added to 1 mL of LMNV dispersion (6 mg/mL) to have an approximate NHS-PEG-DSPE:angiopep-2 theoretical molar ratio of 1:2. The dispersion was diluted in phosphate-buffered saline (PBS, Sigma-Aldrich) to optimize the pH for the reaction between NHS and the amine groups on the peptide. The solution was left under gentle shaking at 4 °C in the dark for 4 h. Then, it was washed three times by centrifugation (16 000g, 90 min, 4 °C), and the final pellet was redispersed in 1 mL of Milli-Q water.
For confocal imaging, Ang-LMNVs and LMNVs were labeled with a fluorescent Vybrant DiO cell-labeling dye (Invitrogen) by incubating 1 mg of particles with 10 μL of dye for 2 h at 37 °C and then washing three times by centrifugation (16 000g, 90 min, 4 °C).
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4

Hybrid Piezoelectric Nanoparticles for Drug Delivery

Hybrid lipid-polymeric piezoelectric nanoparticles were synthesized by following a procedure adapted from a previous work by Xiao et al. [28 (link)]. Briefly, 2 mL of P(VDF-TrFE) (45:65, Piezotech) (5 mg/mL) and 200 μL of a solution of nutlin-3a (Nut, 5 mg/mL, Sigma Aldrich) in acetone (Sigma Aldrich) were quickly injected with a syringe into 4.5 mL of an aqueous dispersion containing DSPE-PEG (1 mg/mL, Nanocs) under vigorous stirring. The above mixture was sonicated for 10 min in an ice bath (amplitude 70%) using an ultrasonic tip (Fisherbrand™ Q125 Sonicator), and then let under agitation for a few hours to evaporate the majority of the organic solvent. Afterward, the mixture was purified with Am-icon® centrifuge filters (Ultra-4 Centrifugal Filter Unit [MWCO 100 kDa], Sigma-Aldrich) at 2460 g for 15 min at 15°C. The process was repeated three times, and each time the pellet was redispersed in 4 mL sterile MilliQ water.
The recrystallization of the polymeric core was performed by refluxing the nanoparticles at 90°C, above the Curie temperature of P(VDF-TrFE), for 60 min, and then cooling down to room temperature at 1 °C/min. At the end of the reflux procedure, a total of 1 mg DSPE-PEG or DSPE-PEG/DSPE-PEG-maleimide (1/1) was added to further stabilize the nanoparticles, subsequently sonicated for 10 min (amplitude 70%) using an ultrasonic tip (Fisherbrand™ Q125 Sonicator). The lipid in excess was removed by three centrifugation steps with Amicon® centrifuge filters (Ultra-4 Centrifugal Filter Unit [MWCO 100 kDa], Sigma-Aldrich) at 2460 g for 15 min at 15°C.
For the functionalization, 200 μL of a 2 mg/mL aqueous solution of a peptide corresponding to the 141-150 residues of apolipoprotein E (ApoE) (GenScript) were added to 4 mL of the nanoparticles (2 mg/mL), and let under agitation at 4°C for 4 h. Thereafter, functionalized P(VDF-TrFE) nanoparticles (PNPs) were centrifuged 3 times with Amicon® centrifuge filters (Ultra-4 Centrifugal Filter Unit [MWCO 100 kDa], Sigma-Aldrich) at 2460 g for 15 min at 15°C to remove unreacted peptide chains.
Empty nanoparticles were prepared following the same protocol, without dissolving nutlin-3a in the initial polymer/acetone solution.
Fluorescent nanoparticles were prepared in the same way, but adding 5 μL of fluorescent Vybrant™ DiO cell-labeling dye (Invit-rogen) to the 2 mL polymer/acetone solution before mixing it with the lipid aqueous dispersion.
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5

Multifunctional Nutlin-3a Nanoparticles for Targeted Delivery

Nutlin-3a loaded P(VDF-TrFE) nanoparticles (Nut-PNPs) were synthesized and surface-functionalized with a peptide that corresponds to a fragment of apolipoprotein E (ApoE; GenScript), as previously described in a work of our group [15 (link)]. Briefly, 2 ​mL of 5 ​mg/mL P(VDF-TrFE) (45:65; Piezotech) and 200 ​μL of 5 ​mg/mL Nutlin-3a (Sigma-Aldrich) in acetone (Sigma-Aldrich) were placed into 4.5 ​mL of a 1 ​mg/mL 1,2-distearoyl-sn-glycero-3-phosphoethanolamine-poly(ethylene glycol) (DSPE-PEG; Nanocs) dispersion in water under stirring. The obtained mixture underwent three consecutive cycles of sonication (ultrasonic tip; Fisherbrand™ Q125 Sonicator) and purification (Amicon® centrifuge filters, Ultra-4 Centrifugal Filter Unit, 100 ​kDa; Sigma-Aldrich) with the pellet suspended in water (4 ​mL). The polymeric core of the nanoparticles was recrystallized by refluxing (90°C for 60 ​min) and then by progressively cooling down to 25°C (−1°C/min). Subsequently, 1 ​mg of DSPE-PEG/DSPE-PEG-maleimide (1:1) was added for the stabilization of the nanoparticle dispersion, which was sonicated for 10 ​min (ultrasonic tip, 70% amplitude; Fisherbrand™ Q125 Sonicator). Finally, three consecutive centrifugation steps were performed at 15°C (2460 ​g for 15 ​min; Amicon® centrifuge filters, Ultra-4 Centrifugal Filter Unit, 100 ​kDa; Sigma-Aldrich) to remove the excess of lipids. The bioconjugation of the nanoparticles with the ApoE peptide was carried out through the maleimide-thiol click reaction [20 (link)] by incubating the 141–150 residues of the ApoE (200 ​μL of a 2 ​mg/mL water suspension) to 4 ​mL of the 2 ​mg/mL nanoparticle dispersion for 4 ​h at 4°C under shaking. Three centrifugation steps were then carried out as described above to remove the non-bounded peptide. ApoE-PNPs were synthesized following the same protocol used for ApoE-Nut-PNPs, without adding the drug in the polymer/acetone solution. Nut-PNPs and PNPs were obtained skipping the functionalization step. The fluorescent staining of the nanoparticles was obtained by adding 5 ​μL DiO fluorescent dye (Vybrant™; Invitrogen) to the 2 ​mL polymer/acetone initial solution.
Morphologic analysis of PNPs, Nut-PNPs, ApoE-PNPs, and ApoE-Nut-PNPs was performed by transmission electron microscopy (TEM) and scanning electron microscopy (SEM). Concerning TEM, a drop of 70 ​μg/mL nanoparticle dispersions was cast on an ultrathin amorphous carbon film-coated Cu grid composed of 150 mesh and, subsequently, imaging was performed with a JEOL 1011 operating at 100 ​kV. For SEM imaging, a drop of nanoparticle dispersions was deposited on a silicon wafer. Then, samples were imaged with a Helios NanoLab 600i Dual Beam™ FIB/SEM FEI after gold-sputtering (30 ​mA for 1 ​min) with a Quorum Tech Q150RES Gold Sputter Coater. The nanoparticle size was measured from the TEM images by using ImageJ software, and data were reported as average diameter ​± ​standard deviation.
The hydrodynamic size of PNPs, Nut-PNPs, ApoE-PNPs, and ApoE-Nut-PNPs (500 ​μg/mL) were investigated in water at 37°C by using a Nano Z-Sizer 90 (Malvern Instrument); the ζ-potential measurements were performed in the same conditions. The hydrodynamic size and ζ-potential measurements are shown as the mean ​± ​standard deviation of three different measurements with 10 runs for each of them. CONTIN analysis was used to obtain the intensity distribution, and the value of the hydrodynamic diameter and the polydispersity index (PdI) was assessed by cumulant analysis. Furthermore, stability of PNPs, Nut-PNPs, ApoE-PNPs, and ApoE-Nut-PNPs was assessed at a concentration of 500 ​μg/mL in plasma obtained from mice blood (see Section 2.4 for details), at 37°C for 14 days, periodically performing dynamic light scattering measurements.
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