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GAPDH is a housekeeping gene that encodes the enzyme glyceraldehyde 3-phosphate dehydrogenase, which is involved in the glycolytic pathway. This enzyme catalyzes the oxidative phosphorylation of glyceraldehyde-3-phosphate to 1,3-bisphosphoglycerate.

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3 335 protocols using gapdh

1

Protein Expression Analysis by Western Blot

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Western blots were performed using standard procedures. Briefly, cell lysates were prepared using RIPA buffer. Equivalent proteins were separated by SDS-PAGE and transferred onto nitrocellulose blotting membranes (Millipore). Subsequently, the membranes were blocked with 5% BSA for 2 h and then incubated with specific primary antibodies GAPDH (Santa Cruz Biotechnology, CA, USA, 1 : 1000), Bax (Santa Cruz Biotechnology, CA, USA, 1 : 1000), and Bcl-2 (Santa Cruz Biotechnology, CA, USA, 1 : 1000) overnight at 4°C. GAPDH was used as a normalized control. And then membranes were incubated with secondary antibody (Santa Cruz Biotechnology, CA, USA, 1 : 1000) at room temperature for 2 h. The protein bands were finally detected using an Odyssey infrared scanner (Li-Cor Biosciences Inc.) and analyzed using ImageJ software after being normalized to its internal control.
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2

Efficient METTL3 Knockdown in Prostate Cancer

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cDNA transcription was performed using a SuperScript III synthesis kit (Invitrogen) and then used for qPCR based on SYBR (Applied Biosystems). Two siRNAs (siM3-1 and siM3-2) targeting METTL3 were designed, and we observed that the knockdown efficiency of siM3-1 was only 50%, which we considered insufficient for further analyses. Therefore, the more effective target-2 (siM3-2) was selected for the following analysis (Figure S1). The sequences of primers and siRNAs used in this study are shown in Supplementary Table S1.
The siRNA-transfected LNCaP and DU145 cells were lysed in RIPA lysis buffer and Western blotting was conducted as previously (9 (link)). Then, the intensity of METTL3 (Proteintech, 15073-1-AP) and GAPDH (Santa Cruz, sc-25778) bands was quantified using ImageJ software and GAPDH was used as the housekeeping marker.
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3

Western Blot Analysis of SHIP1 and GAPDH

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Tissue was extracted and processed as described above, then centrifuged. Protein concentration was measured with a BCA kit (Thermo Scientific). 50 μg of protein per sample was boiled in SDS-PAGE protein sample buffer for 10 mins at 95°C, loaded into 4-12% Bis-Tris gels (Life Technologies) and run at 100 V for 90 mins. The following primer antibodies were used: SHIP1/INPP5D (CST #4C8 1:500, Rabbit mAb) and GAPDH (Santa Cruz #sc-32233).
Each sample was normalized to GAPDH, and the graphs represent the values normalized to the mean of the WT mice group at each time point.
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4

Serum Deprivation Impacts GAPDH Levels

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N43/5 cells (3 × 105) were cultured in 6-well plates and the day after, the cells were subjected to serum deprivation for 16 or 20 h. The cells were collected, lysed in RIPA buffer, and the GAPDH protein levels were evaluated by Western blot using GAPDH (Santa Cruz #sc-365062, CA, USA) and β-ACTIN antibodies.
N43/5 (2.5 × 105) cells were plated in 6-well plates. The day after, the culture medium was changed to DMEM 2% FBS for 16 h and 100 μM PA or SA (or the same volume of BSA) was added for 6 h. Next, the cells were subjected to serum deprivation for 16 h. Finally, the cells were collected, lysed in RIPA buffer, and the levels of GAPDH evaluated by Western blot as described before.
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5

Luteolin Compound Characterization and Evaluation

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Luteolin (purity > 98%, batch number: XC071225) was purchased from Xi'an Xiaocao Botanical Development Co., Ltd. (Xi'an, China). Sodium carboxymethyl cellulose (CMC-Na), prednisone, prednisolone, and dexamethasone (internal standard for HPLC analysis) were purchased from Sigma-Aldrich Corporation (St. Louis, MO, USA). Methanol of HPLC grade was purchased from TEDIA Company Inc. (Beijing, China). The following items were purchased from the cited commercial sources: anti-11β-HSDI (Abcam, Cambridge, UK, dilution 1 : 800), anti-11β-HSD II (Abcam, Cambridge, UK, dilution 1 : 1000), GAPDH (Santa Cruz Biotechnology Inc., Santa Cruz, CA, USA, dilution 1 : 500) antibodies, goat anti-rabbit IgG (HþL) HRP (BS13278), GAPDH (AP0063), and goat anti-mouse IgG (HþL) HRP (BS12478). All other reagents were of analytical grade.
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6

Protein Expression Analysis by Western Blot

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Cell lysates were separated by sodium dodecyl sulphate (SDS) polyacrylamide gel electrophoresis (PAGE). Primary antibodies used were: PRLR (D01PID5618, Abnova, Taiwan); Moesin (SC6410, Santa Cruz, Texas, USA); p-Moesin (SC12895, Santa Cruz, Texas, USA); FAK (SC271195, Santa Cruz, Texas, USA); p-FAK (SC11765-R, Santa Cruz, Texas, USA); c-Src (SC5266, Santa Cruz, Texas, USA); p-c-Src (SC166860, Santa Cruz, Texas, USA); GAPDH (SC59540, Santa Cruz, Texas, USA). The secondary antibodies Anti-rabbit (SC2357, Santa Cruz, Texas, USA) (1:3000) for PRLR; Anti-goat (SC2768, Santa Cruz, Texas, USA) (1:3000) for Moesin, p-Moesin and Actin, and Anti-Mouse (SC2005, Santa Cruz, Texas, USA (1:3500) for FAK, p-FAK, c-Src, p-c-Src, and GAPDH were incubated for 2 h in room temperature. Primary and secondary antibodies were incubated with the membranes, followed by three 5-min washings with TRIS-buffered saline-Tween 20. Immunodetection was carried out using enhanced chemiluminescence and was recorded with a quantitative digital imaging system (Quantity One, BioRad, Hercules, CA, USA), enabling us to assess saturation. Band densitometric analysis was quantified, as previously described (17 (link)), with the ImageJ image program (National Institute of Health – NIH, USA) using conditions ensuring analysis in the linear range of detection.
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7

Quantifying mRNA and Protein Levels

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The mRNA levels of GAPDH, Bcl-2, and PKC-ι were determined by PCR amplification by using GAPDH primers (forward; 5'-CGGGAAGCTTGTCATCAATGG-3', reverse; 5'-GGCAGTGATGGCATGGACTG-3'), Bcl-2 primers (forward; 5'-CATTTCCACGTCAACAATCATTTCCACGTCAACAATTG-3', reverse; 5'-AGCACAGGATTGGATATTCCAT-3'), and PKC-ι (sc-36257-PR, Santa Cruz Biotechnology). The protein levels of GAPDH, Bcl-2, PKC-ι, and EGFR were determined by western blotting using GAPDH (CB1001, Millipore, Darmstadt, Germany), Bcl-2 (sc-7382, Santa Cruz Biotechnology), PKC-ι (sc-17837, Santa Cruz Biotechnology), and EGFR (2232S, Cell Signaling Technology, Danvers, MA, USA) antibodies.
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8

Western Blot Analysis of Autophagy Markers

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MKN45, NCI-N87, BGC-823 and MGC-803 cells (5×105/well) were cultured overnight in 6-well plates and transfected as described above. Two days later, the cells were harvested using mammalian protein extraction reagent (Pierce, Rockford, IL, USA) mixed with protease inhibitor cocktail (Sigma-Aldrich, St. Louis, MO, USA). The cell lysates (50 µg/lane) were separated on 10% SDS-PAGE and transferred to a polyvinylidene di fluoride membrane. After blocking with 5% non-fat milk in PBST buffer for 2 h, the membranes were incubated overnight at 4°C with the primary antibodies for USP20 (1:1,000; Santa Cruz Biotechnology, Santa Cruz, CA, USA), Claspin (1:1,000; Proteintech Group), ATG5 (1:1,000; Cell Signaling Technology, Boston, MA, USA), LC3 (1:1,000; Cell Signaling Technology) or GAPDH (1:2,500; Santa Cruz Biotechnology) and GAPDH was used as loading control. Secondary antibodies (1:10,000; LI-COR Biosciences, Lincoln, NE, USA) and infrared imaging system (LI-COR Biosciences) were applied to visualize the protein bands.
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9

Protein Expression Analysis of Nerve and Muscle

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The distal end of nerve and middle part of gastrocnemius muscle was harvested two weeks after various treatment and proteins were extracted. Proteins (50 μg) were resolved by SDS-polyacrylamide gel electrophoresis and transferred onto a blotting membrane. Antibodies against Bcl-2 (1:1000, BD), Bad (1:1000, Santa Cruz), Bax (1:1000, Santa Cruz), 8-oxo-dG (1:500, R&D), desmin (1:200, Proteintech), acetylcholine receptor (1:200, Millipore), GAPDH (1: 1000, Santa Cruz) were incubated overnight at 4°C. AFS and fibroblast cell lysated protein (50 μg) was separated by SDS-PAGE electrophoretically transferred to nitrocellulose membranes. After blocking, the blots were incubated with antibodies for NT-3 (1:1000, Millipore), BDNF (1:1000, Abcam), CNTF (1:1000, Abbiotec), GDNF (1:1000, Abbiotec), and GAPDH (1:1000, Santa Cruz). Horseradish peroxidase-conjugated secondary antibodies were used. Protein bands were analyzed by the ISI1000 image system (Alpha Innotech Corporation, CA, USA).
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10

Western Blot Analysis of Hepatic Proteins

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Hepatic proteins were extracted using a T-PER kit (Thermo Scientific, Rockford, IL, USA) followed by quantification using a protein assay kit (Thermo Scientific, Rockford, IL, USA). Proteins (50 μg) were electrophoresed on a 12% SDS-PAGE and transferred to a polyvinylidene fluoride (PVDF) membrane (Bio-Rad, CA). Nonspecific bindings were blocked by 5% non-fat milk in TBST (10 mM Tris pH 7.5, 100 mM NaCl, 0.1% Tween 20). Antibodies specific for CYP7A1 (Millipore, Billerica, CA, USA), CYP8B1 (Santa Cruz Inc., Santa Cruz, CA, USA), SHP (Santa Cruz Inc., Santa Cruz, CA, USA), and GAPDH (Santa Cruz Inc., Santa Cruz, CA, USA) were used. Anti-mouse IgG (Thermo Scientific, Rockford, IL, USA) was used for detection of CYP7A1, CYP8B1, and SHP, while anti-rabbit IgG (Santa Cruz Inc. Santa Cruz, USA) was used for detection of GAPDH. Signals were imaged with Chemiluminescent Substrate Kit (Thermo Scientific, Rockford, IL, USA). NIH image program (ImageJ 1.47, http://rsb.info.nih.gov/ij/) was used to scan the band densities on western blot images. Scanned densities of target proteins were normalized to GAPDH bands, and then used for Student's t-test.
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