The largest database of trusted experimental protocols

29 protocols using ez link sulfo nhs lc biotin kit

1

Quantifying SARS-CoV-2 Spike Protein Binding

Check if the same lab product or an alternative is used in the 5 most similar protocols
ACE2‐receptor‐binding domain (RBD) interaction studies were performed on an Octet RED96e system using high precision streptavidin biosensors (ForteBio). ACE2‐Fc was biotinylated using the EZ‐Link Sulfo‐NHS‐LC Biotin kit (Thermo Fisher Scientific) and purified using PD‐10 desalting columns (Cytiva). All assays were conducted in PBS supplemented with 0.05% v/v Tween 20 and 0.1% w/v BSA (PBST‐BSA) at 25°C with the plate shaking at 1000 rpm. The biosensors were first equilibrated in PBST‐BSA and then dipped into a 34 nM solution of the respective biotinylated capture molecule. To determine Kd values, titration of HEK293‐produced RBD was performed to cover a broad concentration range around the respective Kd value.[10] To record association rates, ACE2‐Fc‐loaded biosensors were submerged either into two‐fold (200–6.25 nM) or three‐fold (200–0.8 nM) serial dilutions of RBD for 600 s. For dissociation, the biosensors were dipped into PBST‐BSA for 100 s. Each experiment was performed in triplicates. Data were evaluated using the Octet data analysis software version 11.1.1.39. ELISA assays were carried out as described.[10]
+ Open protocol
+ Expand
2

Optimized Anti-4-1BB Antibody Development

Check if the same lab product or an alternative is used in the 5 most similar protocols
ATOR-1017 and a human IgG4 isotype control (anti-GFP) were isolated from Alligator Bioscience proprietary antibody library ALLIGATOR-GOLD®. Specific 4-1BB binders were identified, screened, and further evaluated in IgG4 format (S228P) [27 (link)]. The selected anti-4-1BB binder was optimized for developability using selection and screening from designed libraries and FIND technology [28 (link)].
ATOR-1017 was expressed from a stable CHO DG44 cell line (Sartorius) and purified by MabSelect MabSuRe Protein A. The human IgG4 isotype, an ATOR-1017 binder with an IgG1 isotype and analogues of urelumab, utomilumab, ADG106 and CTX471 [19 (link), 29 (link), 30 (link)] were all expressed by transient transfection of ExpiCHO-S cells (Gibco/Thermo Fisher Scientific). Biotinylated ATOR-1017 was generated using EZ-link sulfo-NHS-LC-Biotin kit (#21,335, Thermo Fisher Scientific).
+ Open protocol
+ Expand
3

Multicolor Flow Cytometry Immunophenotyping

Check if the same lab product or an alternative is used in the 5 most similar protocols
We used the following antibodies: from Biolegend; anti-CD3ε (clone 145–2 C11), anti-CD4 (clone GK1.5), anti-CD11b (clone M1/70), anti-CD19 (clone 6D5), anti–IFN-γ (clone XMG1.2), anti-NKp46 (clone 29A1.4), anti–NK1.1 (clone PK136), anti-Ter119 (clone TER-119), anti-CD31 (clone 390), anti-Podoplanin (clone 8.1.1), anti-HEV (clone MECA-79), mouse IgG2b isotype control, and rat IgG2b isotype control; from eBioscience; anti-CD27 (clone 37.51), anti-CD45.1 (clone A20), anti-CD45.2 (clone 104), anti-CD107a (clone 1D4B), anti-NKG2D (clone MI-6); from R and D Systems; mouse NKG2D-Fc fusion protein; from Jackson ImmunoResearch; goat anti-mouse IgG. For flow cytometry analysis of RAE-1ε, we used the EZ-Link-Sulfo-NHS-LC biotin kit (Thermo Fisher) to biotinylate clone 205001 mAb (from R and D Systems), the same clone used for in vivo NKG2D ligand blockade.
+ Open protocol
+ Expand
4

Omicron BA.2 Spike Protein Binding Kinetics

Check if the same lab product or an alternative is used in the 5 most similar protocols
The binding of anti-SARS-CoV-2 antibody JMB2002 to Omicron BA.2 spike ECD was determined using Octet Red96e (Sartorius). The biotinylation of Omicron BA.2 spike ECD protein were performed using EZ-Link Sulfo-NHS-LC-Biotin kit (ThermoFisher Scientific, A39257) following the manufacturer’s instruction. SA biosensors (Sartorius, 18-5020) were used to capture the biotinylated Omicron BA.2 spike ECD protein. The interaction of Omicron BA.2 spike ECD protein-coated sensors with different concentrations of anti-SARS-CoV-2 antibody JMB2002 were recorded prior to dissociation in kinetics buffer (0.02% Tween-20 in PBS). KD values were calculated with Octet Data Analysis HT 12.0 software using a 1:1 global fit model. Data were plotted using Prism V8.0 software (GraphPad). One representative figure from two independent experiments is shown.
+ Open protocol
+ Expand
5

Surface Plasmon Resonance Analysis of Decorin Binding

Check if the same lab product or an alternative is used in the 5 most similar protocols
Interaction between the recombinant proteins and bovine decorin (Sigma, D8428) was studied by surface plasmon resonance (SPR) using a Biacore® X100 system (GE Healthcare). Bovine decorin was biotinylated using EZ-Link™ Sulfo-NHS-LC-Biotin kit (ThermoFischer Scientific) and immobilized on a SA sensor chip (GE Healthcare). The amount of immobilized decorin corresponded to 268 Response Units (RU). A separate flow channel on the same sensor chip, reserved for control runs, was prepared in the same way but with biotinylated BSA, immobilized at a level of 685 RU. Analytes were injected in dilution series at 25 °C and at a flow rate of 20 μL.min−1. Between each injection, surfaces were regenerated by 2 washes with 5 μL of 2 M NaCl followed by 1 wash with 1 M NaCl/50 mM NaOH. All curves were corrected for nonspecific binding by subtraction of control curves obtained from injection of the corresponding protein through the blank flow channel. Kinetic constants were determined following a 1:1 binding curve fitting.
+ Open protocol
+ Expand
6

Antibody-Antigen Binding Kinetics Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Affinities were determined with ForteBio-based biolayer interferometry (Pall: OctetRED96). Sintilimab was biotinylated with EZ-Link Sulfo-NHS-LC-Biotin kit (Thermo Scientific), and loaded onto SA - Streptavidin biosensors at 150 μg/ml. After washing, sensors were dipped into buffer containing antigen at 5 μg/ml or the indicated concentrations, then dissociated in SD buffer (sample dilution buffer: 1× Phosphate Buffered Saline
(PBS) + 0.1% BSA + 0.05% Tween-20). Data analysis was carried out on ForteBio software. Biotinylated FcγRs were loaded onto SA - Streptavidin biosensors and dipped into IgG in solution. For C1q binding, biotinylated anti-PD-1 antibody was loaded onto SA - Streptavidin biosensors and dipped into C1q.
Surface plasmon resonance (SPR) analysis was carried out using Series sensor S chips (protein A; GE Healthcare Life Sciences) for measuring affinity kinetics between IgG and hPD-1 antigen. HBS-EP buffer (running buffer; 0.01 M HEPES, 0.15 m NaCl, 3 mm EDTA, 0.05% v/v P20, pH 7.4) and regeneration buffer (10 mm glycine-HCl, pH 1.5∼2.0) were used throughout experimentation. Antibodies were diluted in running buffer to 5 μg/ml. Antigens were prepared and serially diluted 2× from 25 nm (human) or 50 nm (cynomolgus) to 0.78 nm. Antibody was immobilized onto the chip with an/tigen flowed across the chip in running buffer.
+ Open protocol
+ Expand
7

SPR Analysis of F0016 mAbs-FcRn Interaction

Check if the same lab product or an alternative is used in the 5 most similar protocols
The interaction of F0016 mAbs with human FcRn (Sino Biological, Inc.) was monitored by SPR detection using a Biacore 3000 instrument (GE Healthcare) as described in the previous paragraph. Streptavidin dissolved in 10 mM sodium acetate, pH 4.26, at a concentration of 5μg/mL was immobilized onto a Biacore CM5 biosensor chip in flow cells 1 and 2 using amine coupling chemistry to reach a density of 1624.5 RU and 2198.0 RU, respectively. FcRn was biotinylated using EZ-Link® Sulfo-NHS-LC-Biotin (Thermo Scientific) according to the manufacturer’s recommendations. Biotinylated FcRn generated using an EZ-Link Sulfo-NHS-LC-Biotin kit (Thermo Scientific) was prepared at 2 μg/mL in HBS-EP buffer, pH 8.0, and injected for 7 min at a flow rate of 10μl/min. The F0016 antibody dilutions from 0 nM to 10 nM in HBS-EP buffer pH 6.0 were injected at a flow rate of 50μl/min for 3 min, followed by dissociation for 3 min. The chip was regenerated with HBS-EP buffer pH 8.0. Kinetic binding constants for the antibody-FcRn interactions were determined using the Biacore 3000 program from each set of equilibrium binding responses fitted to the 1:1 Langmuir binding model.
+ Open protocol
+ Expand
8

Quantification of IGF1R-Ligand Binding

Check if the same lab product or an alternative is used in the 5 most similar protocols
We coated 96-well Nunc-Immuno Maxi-Sorp plates (Thermo Scientific) with recombinant human IGF1R ECD (Sino biological, 100 ng/well) for 16 h at 4°C. The plates were then washed with PBS-T (Tween 20, 0.05%) and blocked with 1% BSA in PBS (200 μL/well) for 2 h at 37°C. Serially diluted M30103, B30104, or A12 (400 nM–0.026 nM) was added to each well (100 μL/well) and incubated for 30 min at 37°C. PBS was used as a negative control. After washing five times with PBS-T, human IGF1 that was biotinylated using the EZ-Link Sulfo-NHS-LC-Biotin kit (Thermo Fisher Scientific) was added into each well (100 ng/well) and incubated for 2 h at 37°C. The plates were further incubated with streptavidin-horseradish peroxidase (Pierce, Cat: #21126, 1:5,000 from 1 mg/mL stock, 20 ng/well) for 1 h at 37°C. After washing with PBS-T, the plates were incubated with 100 μL of TMB substrate reagent (Sigma) for 5 min. The calorimetric reaction was measured using a microplate reader (Molecular Device SpectraMax 190) at 450–650 nm after the addition of 50 μL of 1 N sulfuric acid.
+ Open protocol
+ Expand
9

Quantifying hEPO in Plasma after mRNA Delivery

Check if the same lab product or an alternative is used in the 5 most similar protocols
For the analysis of hEPO protein in the plasma after hEPO mRNA delivery via MC3-LNPs and mc3-EVs, hEPO assay was developed in-house on the Gyros platform. The capture antibody (3F6, MAIIA diagnostics) was biotinylated according to kit insert using EZ-Link Sulfo-NHS-LC-Biotin kit (Thermo Scientific). The detection antibody (7D3, MAIIA diagnostics) was Alexa 647-labelled using monoclonal antibody labeling kit (Thermo Scientific). The hEPO protein (in-house) was used to generate a standard curve in Rexxip A buffer (Gyros Protein Technologies) ranging from 12.2 pg/mL to 50 ng/mL. Mouse plasma samples were diluted 1:1 (v:v) in Rexxip A-max buffer (Gyros Protein Technologies) prior to analysis. The samples were analyzed on a Gyrolab Bioaffy 1000 CD (Gyros Protein Technologies) with Gyrolab instrument (Gyrolab xP workstation, Gyros Protein Technologies). A 5-parametric curve fitting was used for the standard curve. All standards and samples had CVs below 10%.
+ Open protocol
+ Expand
10

Mucosal IgA Response to SARS-CoV-2 Variants

Check if the same lab product or an alternative is used in the 5 most similar protocols
Vaccine-induced mucosal IgA specific to SARS-CoV-2 variant spike and RBD were measured with the Mesoscale Discovery (MSD) 4-spot U-PLEX Development Pack (MSD cat#K15229N). Spots were linked with anti-Syrian hamster IgA antibody (Brookwood Biomedical cat#sab3001a) biotinylated with the EZ-Link Sulfo-NHS-LC-Biotin kit (Thermo Fisher Scientific cat#A39257) and either biotinylated Wuhan, delta, or omicron variant SARS-CoV-2 spike trimer and RBD proteins (ACROBiosystems cat#SPD-C82E9, SPN-C82Ec, SPD-C82Ed, SPN-C82Ee, SPD-C82E4). Plates were coated, blocked, washed, and incubated with sample and detection antibody according to the manufacturer’s recommendations. Nasal samples were diluted at 1:15 and oral samples were diluted at 1:5 in Diluent-100 (MSD cat#R50AA). The anti-Syrian hamster IgA antibody was sulfo-tagged with the MSD GOLD SULFO-TAG NHS-Ester Conjugation Pack (MSD cat#R31AA) and diluted with Diluent-100 to 2 µg/mL for the nasal samples and 1 µg/mL for the oral samples. Plates were read on a Meso QuickPlex SQ 120 instrument (MSD). Samples were reported as relative light units (RLUs). Due to the variability in mucosal sampling, samples were normalized by total IgA and expressed as fold change was reported as vaccinated over unvaccinated sample. Data analysis was performed in GraphPad Prism (Version 9.4.1).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!