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77 protocols using «aunps»

1

Aptamer-Based Biosensor for P. aeruginosa

2025
HS-MEG-OH and HS-MEG-COOH were synthesized based on previous procedures [5 (link),11 (link)]. Anhydrous magnesium sulphate, sodium thiosulfate, sodium carbonate, sodium iodide, sodium chloride, and absolute ethanol were obtained from the University of Toronto (Toronto, ON, Canada). Other organic solvents (methanol, ethyl acetate, hexane, dichloromethane, and acetonitrile) were analytical grade and from Sigma–Aldrich (Darmstadt, Germany). T-butyl acrylate, hydrogen peroxide, zinc, trifluoroacetic acid, β-mercaptoethanol, N-hydroxysuccinimide (NHS), 1-(3-(dimethylamino)propyl)-3-ethylcarbodiimide hydrochloride (EDC), and ethanolamine were purchased from Sigma–Aldrich (Darmstadt, Germany). Chemicals were used without further purification. Ammonium hydroxide (NH4OH) and N-Benzyltrimethylammonium hydroxide (40% in methanol w/w) were purchased from Fisher Scientific (Ottawa, Canada). AuNPs (5 nm diameter, OD 1, stabilized suspension in 0.1 mM phosphate-buffered saline (PBS), reactant free) were purchased from Sigma–Aldrich (Darmstadt, Germany). Aqueous solutions were prepared using Milli-Q water (18.2 MΩ.cm).
The lyophilized aptamer against P. aeruginosa (5’-CCC CCG TTG CTT TCG CTT TTC CTT TCG CTT TTG TTC GTT TCG TCC CTG CTT CCT TTC TTG-3’, with a 3’ amino modification) was purchased from Generi Biotech (Hradec Králové, Czech Republic). The aptamer sequence follows these cited works [12 (link),13 (link),14 (link),15 (link),16 (link),17 (link),18 (link)]. A 100 μM stock solution of the lyophilized aptamer was prepared in DNase-free TE buffer (10 mM Tris-HCl, 1 mM EDTA, pH 8.0). This stock solution was divided into 100 μL aliquots and stored at −20 °C. Before functionalizing the gold electrodes with aptamer, an aliquot was diluted with Milli-Q water to a concentration of 5 μM. The secondary structure of the aptamer was analyzed with OligoAnalyzer Tool software (Integrated DNA Technologies, Coralville, IO, USA) and the results are reported in the Supplementary Material (see Supplementary Material, Section S1).
PBS was used as a binding buffer and was prepared with 137 mM NaCl, 2.7 mM KCl, 10 mM Na2HPO4, and 1.8 mM KH2PO4 at pH 7.4. A 0.22 μm membrane (Merck-Millipore, Darmstadt, Germany) was used to filter every solution. Pseudomonas aeruginosa PAO1 was provided by the National Collection of Agricultural and Industrial Microorganisms (Budapest, Hungary) and Lactococcus acidophilus LA-5 was kindly supplied by C. Hansen (Hørsholm, Denmark). Escherichia coli DH5α and Staphylococcus aureus KR3 were purchased from the University of Toronto Medstore (Toronto, ON, Canada). Whole UHT cow’s milk (3.5% fat) was bought from LIDL (Bratislava, Slovakia) and from Walmart (Toronto, ON, Canada).
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2

Tau Protein Detection Assay

2025
AuNPs with different sizes were
purchased from Millipore Sigma. NaCl (NaCl, purity of >99%) was
purchased
from ThermoFisher. Aptamers (Table S1),
T1,26 (link) T2,26 (link) BT,19 (link) and AT,32 (link) were purchased
from IDT Co, which is specifically used to detect tau. The scrambled
aptamer, which has no affinity to tau, was also purchased from IDT
Co. Deionized water was used to prepare all of the solutions. Recombinant
tau was obtained from Abcam.
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3

Purchasing and Storing AuNPs

2025
The 5 nm and 10 nm AuNPs were purchased from Sigma-Aldrich (Johannesburg, South Africa). The AuNPs were filtered and stored in sterile 50 mL tubes to ensure that no contamination could occur.
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4

Functionalized SERS Nanotags for Antigen Detection

2025
Gold nanoparticles (AuNPs) with a diameter of 50 nm (Merck, Temecula, USA) were prepared as a solution. Then, 1 mL of AuNP solution was mixed with 1 μL of 3% Tween 20 and reacted for 10 min under vortexing to reduce AuNP aggregation. MGITC (3 μL, 100 μM) was added to the AuNP solution and gently mixed for 40 min. Afterwards, the solution was treated with 100 μM SH-PEG-COOH for 2 h to modify the AuNP surface with carboxyl groups. After the reaction, the solution was centrifuged (6000 rpm, 10 min) twice and redispersed in MES buffer. To convert the carboxyl groups to amine groups, 10 μL of 1 mM EDC/NHS solution was added, and the solution was vortexed for 30 min. Centrifugation (6000 rpm, 10 min) was performed to remove the unreacted EDC/NHS solution, which was redispersed in 10× PBS buffer. Next, 20 μL of cTnI antibodies (100 μg mL−1) were reacted with the solution overnight. The antibody-conjugated AuNPs were centrifuged (6000 rpm, 10 min) and redispersed in 1 mL of 10× PBS buffer. Finally, 50 μL of blocking buffer (1.575% BSA + 1.575% Triton X-100 in 10× PBS buffer) was added to prohibit non-specific binding on the SERS nanotags. The SERS nanotags were centrifuged (6000 rpm, 10 min) and redispersed in 500 μL of 10× PBS buffer. For the competition assay, antibody-conjugated SERS nanotags were premixed with a specific concentration of the target antigen for 1 h. Unreacted target antigens were removed by centrifugation (6000 rpm, 10 min), and the sediments were dispersed in 10× PBS buffer.
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5

Indirect Competitive Immunochromatography for Daidzein

2024
The immunochromatography test strip based on the indirect competitive method for the detection of daidzein is shown in Fig. 1. The sample pad was a 10 mm × 30 mm Glass Fiber Diagnostic Pad (Merck GFDX103000). A drop of pretreatment solution [0.01 M PBS (2% BSA, 2.5% glycerol, 0.1% Tween20)] was added to the sample pad on a Teflon container and dried well in an incubator at 37 ℃.
For gold-antibody conjugation, 400 µL of pH 7.1 PBS was mixed with 10 mL of 5 nm gold nanoparticles (AuNPs, Aldrich). Then 200 µL of 250, 375, or 875 µg/mL anti-daidzein antibody was added and the mixture was incubated for 30 min at room temperature. Next, 0.5 mL of 10% BSA was added and mixed well. The tubes were then centrifuged at 13,200 rpm for 60 min in 1.5 mL tubes. The supernatant was then discarded and resuspended in 100 µL of storage buffer [20 mM Tris (pH 8.0), 150 mM NaCl, 1% BSA (w/v)] and stored at 4 ℃. The samples were diluted with 400 µL of storage buffer immediately before use. The conjugate pad was also a 10 mm × 30 mm Glass Fiber Diagnostic Pad (Merck GFDX103000). AuNPs conjugated with the required concentration of anti-daidzein antibody were impregnated on glass microfiber sheets and dried on a Teflon container in a cool incubator at 37 ℃, as for the sample pads.
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Top 5 protocols citing «aunps»

1

AuNP-DNA Conjugation for Nanocapsule Encapsulation

The steps of AuNP-DNA conjugation were all carried out at 40 °C
with constant shaking, if not stated otherwise. First, 20 μL
of AuNPs of 5 nm diameter (Sigma-Aldrich) was incubated with 0.4 μL
1% SDS water solution for 20 min. Then 2 μL of thiolated oligos
(100 μM, Integrated DNA Technologies) was added and incubated
for 30 min. In the salting process, first 0.2 μL of 2.5 M NaCl
was added at 2 min interval for 6 times, followed by additions of
0.4 μL and 0.8 μL of NaCl for 6 times each at the same
interval. After the salting, the AuNP-DNA conjugates were mixed with
30 μL of folding buffer (with 0.02% SDS) and incubated for 1
h. Finally, the conjugates were purified from the free oligos by spin-filtration
through a 100 kDa MWCO Amicon filter at RT and 14000 rcf for 10 min
and repeated for 4 times. In each filtration step, 480 μL of
folding buffer at either pH 6 or pH 8 was added in order to match
the nanocapsule sample pH. For the AuNP encapsulation, the AuNP-DNA
and nanocapsule with complementary cargo strands were mixed in a 10:1
AuNP:origami ratio and thermally annealed from 40 to 20 °C (−0.1
°C/min).
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2

Fabrication of Surface-Modified SiNW FET Devices

The nanowire growth procedure is similar to those reported in the previous studies.[46, 47] Gold nanoparticles (AuNPs, Sigma‐Aldrich, the average diameter of ≈20 nm) were used as catalysts dispersing on silicon wafers with a 300 nm thick thermal oxide layer. Boron‐doped p‐type SiNWs were synthesized at 470 °C for about 20 min by using 2.5 sccm Si2H6 (Matheson Gas Products, 99.998% Purity) as reactant gas, 0.25 sccm B2H6 (100 ppm, diluted in H2) as a p‐type dopant, and 7.0 sccm H2 as the carrier gas. The wafer on which silicon nanowires and 10–20 µL triethoxy (3‐succinate propyl) silane (TESPSA, 95%, J&K) were grown was placed in a sealed container which was then heated at 120 °C for 2 h. After the vapor modification, modified SiNWs were transferred to a 1.4 cm × 1.8 cm silicon substrate with a 1000 nm thick thermal oxide layer. The electrode patterns were defined by a standard UV lithography (BG‐401A, China electronics technology Group Corporation). After the etching of SiNWs with a buffered HF solution (40% NH4F:40% HF, 7:1) to remove the oxide shell, 8 nm Cr and 80 nm Au were deposited through thermal evaporation (ZHD‐300, Beijing Technol Science) to form metal electrodes. A 30 nm thick SiO2 protective layer was then deposited through electron beam thermal evaporation (TEMD‐600, Beijing Technol Science) in order to passivate the contact interface. After lift‐off with acetone, the surface‐modified SiNW FET devices were obtained.
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3

Characterization and Preparation of Citrate-Stabilized AuNPs

Two sizes of citrate-stabilized AuNP (Ted Pella, Inc., Redding, CA) were confirmed with transmission electron microscopy (TEM, Figure 1) and dynamic light scattering (DLS, n = 3 samples, 500 measurements per sample, LB-550, Horiba Instruments, Inc., Irvine, CA). The AuNPs were washed twice with 18 MΩ water (Millipore Corp., Billerica, MA) and concentrated by centrifugal filtration. Prior to intravenous injection, they were sterilized by exposure to ultraviolet light for 15 minutes. As there is batch-to-batch variation in AuNPs, all experiments were performed with the same batches of AuNPs. Finally, both solutions of AuNPs remained a dark red wine color during preparation and treatment. Specifically, the color did not change to purple suggesting aggregation of particles.
Vx2, a highly aggressive rabbit squamous cell carcinoma, (Shope and Hurst 1933 (link)) was acquired from the Department of Veterinary Medicine and Surgery of The University of Texas M. D. Anderson Cancer Center (MDACC). The tumor was serially passaged by thigh intramuscular injection into New Zealand white rabbits (NZW, Harlan Laboratories, Houston, TX) twice prior to use in the experiments described herein. The MDACC Institutional Animal Care and Use Committee approved all protocols and animal care.
Miscellaneous supplies for blood, urine, and tissue collection were acquired from BD Medical (Franklin Lakes, NJ). Assorted chemicals and laboratory supplies were acquired from Sigma Aldrich Corp. (St. Louis, MO) unless otherwise noted.
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4

Gold Nanoparticle Synthesis Protocol

Tetrachloroauric (III) acid trihydrate (HAuCl4 · 3H2O; 99.9%), trisodium citrate dehydrate, sodium chloride, hydrochloric acid, nitric acid, and kanamycin were purchased from Merck (Darmstadt, Germany). The single-stranded DNA aptamer was synthesized by Integrated DNA Technologies Inc. (IDT, Coralville, IA, USA). Commercially available AuNPs (Aldrich, Atlanta, GA, USA) were used as reference materials for spectroscopy, size, and morphology characterizations. All the solutions were prepared with ultrapure water (18.2 MΩ) obtained from a Millipore Simplicity Water System (Merck, Milford, MA, USA).
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5

Electrochemical Detection of Vancomycin

All chemicals were of analytical grade and were used as received without further purification. HCl, Na 2 HPO 4 , NaH 2 PO 4 , NaCl, HAuCl 4 , HClO 4 , H 2 SO 4 , ampicillin trihydrate (AMP), penicillin V potassium salt, penicillin G sodium salt, oxacillin sodium salt, amoxicillin, ascorbic acid, acetaminophen, and the human serum were purchased from Sigma-Aldrich (Saint Louis, MO, USA); cefalexin monohydrate (CFX) from Antibiotice SA (Ias , i, Romania); vancomycin sulfate from Linaris, Dossenheim, Germany; and gentamicin sulphate from Bioworld, Dublin, OH, USA. AuNPs of 15 and 50 nm were purchased from Nanovex Biotechnologies, Asturias, Spain. In order to test if the size of these AuNPs influences the VAN detection, these two dimensions were chosen as they are at extremes of the usual dimensions of AuNPs obtained through electrogeneration [19] .
All solutions were prepared with ultrapure water (18.2 MΩ, Millipore Simplicity, Burlington, MA, USA).
The supporting electrolyte used in this study was the solution of 0.05 mol•L -1 phosphate buffer saline (PBS) prepared with Na 2 HPO 4 , NaH 2 PO 4 and NaCl, adjusted to the mentioned values of pH.
All experiments were performed in compliance with the ethics guidelines of the "Iuliu Hatieganu" University of Medicine and Pharmacy, Cluj-Napoca, Romania.
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