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Synergy 2

Manufactured by Agilent Technologies
Sourced in United States, Germany, France, United Kingdom, China

The Synergy 2 is a multi-mode microplate reader designed for a range of applications, including absorbance, fluorescence, and luminescence detection. It features a xenon flash lamp and sensitive photodetectors to provide accurate and reliable measurements. The Synergy 2 supports a variety of microplate formats and can accommodate multiple detection technologies to meet the needs of various research and testing requirements.

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1 890 protocols using synergy 2

1

Determination of Glucosinolate Content

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Total amounts of glucosinolates were determined according to Gallaher et al. (Gallaher et al. 2012) (link), as reported previously (Klimek-Szczykutowicz et al. 2020a, b) , based on their alkaline hydrolysis and subsequent reaction of released 1-thioglucose with ferricyanide. A decrease in absorbance was read at 420 nm (Synergy II, BioTek, Winooski, VT, USA). Briefly, lyophilized and pulverized samples were extracted after myrosinase inactivation. The centrifuged extract was evaporated under N 2 (TurboVap evaporator, Zymark, Midland, MI, USA), and after reconstitution in H 2 O the samples were subjected to anion-exchange SPE (Supel-Select SAX, 60 mg, 3 mL, Bellefonte, PA, USA) to clean up. The GSLs were eluted with 4 × 0.25 mL of 0.5 M NaCl then dried under N 2 , and the GSLs were hydrolysed with 1 M sodium hydroxide. After 30 min., the samples were neutralised with concentrated hydrochloric acid. The colorimetric reaction of 2 mM potassium ferricyanide solution (0.4 M phosphate buffer pH 7.0) with the standard or sample solution was monitored in 96-well plates. Absorbance was read at 420 nm (Synergy II, BioTek, Winooski, VT, USA) 2 min. after ferricyanide addition. The total GSL content was expressed as sinigrin equivalent in mg of sinigrin (SIN)/100 g DW.
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2

Determining Antibiotic Susceptibility of Bacterial Strains

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Freezer stocks of B. subtilis 168 and S. aureus MRSA131 were streaked onto LB agar plates and incubated at 37 °C overnight. The next day, 10 mL of LB media was inoculated with a single colony from each plate and incubated at 37 °C while shaking. Using a previously described protocol from Nicolaou et al.,58 (link)B. subtilis 168 and MRSA131 were exposed to increasing concentrations of the tested antibiotic (0.125–64.0 μg/mL; prepared in the Nicolaou laboratories) in LB broth and incubated overnight at 37 °C. The lowest concentration at which the antibiotic appeared to be inhibiting growth was determined to be the MIC for the drug. This same procedure was used for E. faecalis S613 except a mix of 80% Lysogeny and 20% Brain Heart Infusion (LBHI) agar and broth media was used and MICs were determined by reading the OD600 on the Synergy 2 (BioTek) Gen5 plate reader. To test the cysteine dependency of the adapted B. subtilis 168 strains, they were cultured overnight in Spizizen minimal media (17 mM K2HPO4, 8 mM KH2PO4, 3 mM (NH4)2SO4, 1.2 mM sodium citrate, 0.16 mM MgSO4, 1 μg/mL tryptophan, and 0.4% glucose at pH 7.0) at 37 °C on a Synergy 2 (BioTek) Gen5 plate reader.
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3

MTS Assay for 2D and 3D Cell Proliferation

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The MTS cell proliferation assay was carried out on both 2-D surface and within the 3-D hydrogel with HMSCs utilizing CellTiter 96® AQueous One Solution Cell Proliferation Assay (Promega) according to manufacturer's instructions. For 2-D cell proliferation assay, the cells were cultured for 1, 4, 7, 14, 21 days. At the end of the specified time points, 20 μL of proliferation assay reagent was mixed with 100μl of culture media and added to each well. The plate was then placed in a 37°C incubator for 60 minutes and the absorbance measured at 490 nm using a microplate reader (BioTek Synergy 2). For 3-D cell proliferation assay, the cells were cultured for 1, 4, 7, 14 and 21 days. The samples were washed twice with PBS and 100 μL of fresh media with 20 μL of proliferation assay reagent were added to each well. After 90 minutes of incubation in a humidified 37°C chamber, the gels were removed and the absorbance was measured at 490 nm using a microplate reader (BioTek Synergy 2).
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4

Quantifying Plasma Nitric Oxide and Corticosterone

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Nitric oxide was analyzed from frozen plasma samples using a nitric oxide assay kit (Invitrogen) according to the manufacturer’s instructions; the nitrite concentration was calculated based on standard curve measuring optical density at 540 nm on a plate reader (BioTek Synergy2). Corticosterone was measured colorimetrically in plasma using DetectX corticosterone enzyme immunoassay kit K014-H1 (Arbor Assays). After incubation, the reaction was read at 450 nm on a BioTek Synergy2 plate reader.
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5

Cell Viability and Proliferation Assays

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Cells were seeded in 96-well plates with a 5000 cells/well density. After the treatment, 10 μL of alamarBlue reagent (ThermoFisher, MA, USA) was added to each well, mixed and then incubated for 4 h at 37 °C in a CO2 incubator. The absorbance of each sample was measured using a scanning microplate spectrophotometer reader (Synergy 2, Biotek, Winooski, VT, USA) by absorbance detection at 570 nm or fluorescence detection at excitation and emission wavelengths of 540–570 and 580–610 nm, respectively. IC50 values for each treatment were calculated using the GraphPad software. For cristal violet proliferation assay, cells were seeded in 96-well plates with a 5000 cells/well density. Twenty-four hours later, cells were treated or not with 0.5 µM epi-enprioline or DMSO for up to 72 h. Cells were washed once with PBS and fixed with 4% paraformaldehyde (PFA) for 15 min. The PFA was removed, and cells were stained for 30 min at room temperature with an aqueous solution containing 0.1% (w/v) crystal violet. Cells were washed three times with distilled water before the administration of 200 µL/well of 10% acetic acid and shaking with micropipettes. The absorbance of each sample was measured using a scanning microplate spectrophotometer reader (Synergy 2, Biotek) by absorbance detection at 595 nm.
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6

Antioxidant Activity Evaluation of Resveratrol Nanogels

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The DPPH assay was conducted after optimizing the previously described protocol [41 (link)]. Briefly, 100 µL of resveratrol-loaded nanogel dispersion (78 µg/mL) and a hydroalcoholic solution of pure resveratrol in the same concentration were added to a 100 µL ethanol solution of DPPH (440 µg/mL). Immediately after that, the absorbance of the reduced form of DPPH was measured in a multiplate reader, Synergy 2 (BioTek Instruments, Inc., Highland Park, Winooski, VT, USA), at 517 nm and 25 °C.
The ABTS assay was performed after modification of previously described procedures [42 (link),43 (link)]. A stock solution of ABTS was mixed with potassium persulfate in water, and the mixture was incubated in a dark place at 25 °C for 16 h. Therefore, 100 µL of resveratrol-loaded nanogel dispersion (78 µg/mL) or a hydroalcoholic solution of pure resveratrol in the same concentration were added to 100 µL of a 5% alcoholic solution of ABTS. The absorbance of the samples was measured in a multiplate reader, Synergy 2 (BioTek Instruments, Inc., Highland Park, Winooski, VT, USA), at 734 nm and 30 °C.
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7

Cytotoxicity Assay for TNBC Cells

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The sulforhodamine B (SRB) proliferation assay was performed as previously described to evaluate the cytotoxic effect of MLN8237 on TNBC cell lines at least in triplicate (18 (link), 19 (link)). The CyQuant measurement of cellular DNA content via fluorescent dye was performed using the CyQuant NF Cell Proliferation Assay Kit and Protocol (Invitrogen, Eugene, OR). In brief, cells were harvested during the logarithmic growth phase and plated in 96-well flat-bottomed plates with lids. Cells were allowed to adhere overnight and then exposed to increasing doses of MLN8237 from 0 – 0.1 µmol/L for 96 hours. For the SRB assay, the incubated cells were fixed, stained with 0.4% SRB (MP Biomedicals), and intensity read using a plate reader (Biotek Synergy 2) at an absorbance wavelength of 565nm. For the CyQuant assay, cellular growth media was removed followed by incubation with the CyQuant dye for 30 minute at 37°C. Next, the fluorescence intensity of each plate was measured using a plate reader (Biotek Synergy 2) with excitation at ~485 nm and emission detection at ~530 nm.
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8

Platelet Cholesterol and Protein Quantification

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Platelet concentration was calculated with a hemocytometer to ensure similar platelet counts between species. 250 μL aliquots were put into a 1.7 mL microcentrifuge tube and spun down at 1000 xg to pellet the platelets; the supernatant was removed, and the pellets were then used to measure cholesterol and total protein content.
Cholesterol levels were determined with an Amplex Red Assay from Life Technologies (Carlsbad, Ca) as directed. Briefly, the pellet was mechanically homogenized to expose the cholesterol to cholesterol oxidase. Hydrogen peroxide was produced in situ and exposed to Amplex Red to form resorufin. The resorufin absorbance at 571 nm was detected using a BioTek Synergy 2 96 well plate reader and a calibration curve was used to convert absorption intensity into concentration.
The protein content was quantified using a Pierce BCA Protein Assay kit from Thermo Scientific (Rockford IL) as directed. Briefly, a working reagent was prepared by mixing 50 parts of BCA Reagent A and 1 part BCA Reagent B. The PRP pellet was resuspended into 25 μL of mammalian protein extraction reagent, and 200 μL of working reagent was added to solution. After 30 min of incubation, the absorbance was measured at 562 nm on a BioTek Synergy 2 96 well plate reader and converted to a concentration using a calibration curve.
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9

Quantifying Cell Proliferation Dynamics

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A white 96 well plate was labeled in triplicate with the cell line and number of cells plated. Initially, a variety of cell concentrations ranging from 500 to 3000 cells per well were plated to determine the best linear growth rate concentration. The appropriate amount of media was added to cell samples to reach a concentration of 100 μL needed per well. The plate was incubated for 2.5 h at 37 °C. Ten μL of the substrate and 10 μL of enzyme from the RealTime Glo Viability Assay (Promega, Madison, WI, USA) were mixed into 4980 μL of media to make a 2X solution. The solution was placed into a hot water bath for 5 min. Media was removed from the 96 well plate and 50 μL of new media was added to wells. Fifty microliters of substrate-enzyme solution was added to each well. The plate was incubated for 1 h at 37 °C. The Biotek Synergy 2 plate reader was prewarmed to 37 °C before the first reading. The plate was read on the prewarmed fluorescent plate reader (Biotek Synergy 2, Winooski, VT, USA) at 24, 48, and 72 h (488 nm) post plating. Results were graphed to determine linearity of concentrations. The following formula was used to determine the doubling time for each cell line:
(t2 - t1)/3.32 x (log n2 - log n1) where t is time and n number of cells (27) {Hayflick, 1973 #8}.
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10

Assessing Neuronal and Microglial Viability

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In this study, we used MTT assay protocol to test whether SF-E alter the oxido-reductase activity in live neurons. Briefly, neurons were treated with specified concentrations of SF-E for 24 h. After incubation, the medium was removed and 100 µL of MTT reagent (0.5 mg/mL) dissolved in DMEM was added to each well. The plates were incubated for 3 h at 37°C, and the formazan particles formed by reduction of the tetrazolium dye to its insoluble formazan were dissolved with 100 µL DMSO in each well, and absorbance at 540 nm was measured with a microplate reader (Biotek Synergy 2, Winooski, VT).
For microglial cells, we used a protocol containing WST1 (Water Soluble Tetrazolium salt) (Clontech, Mountain View, CA) to determine effects of SF-E on cell viability. WST1 has advantage over MTT because it yields a water soluble formazan and can be read directly without the solubilization procedure. Briefly, cells treated with specified concentrations of SF-E were incubated for 16 h. After incubation, the medium was removed and 10 µL of WST1 reagent (1∶10 of premixed reagent) dissolved in 90 µL DMEM was added to each well. The plates were incubated for 30 min at 37°C and absorbance of formazan produced by the dehydrogenase activity of the living cells was measured at 450 nm using a microplate reader (Biotek Synergy 2, Winooski, VT).
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