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133 protocols using anti tnf α

1

Evaluation of Nerve Regeneration Markers

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Dorsal root ganglion cell culture after electrical stimulation and serial 8-mm-thick section of nerve, muscle, dorsal root ganglion cells, and the brain were cut using a cryostat, and mounted on superfrost/plus slides (Menzel-Glaser, Braunschweig, Germany) were subjected to immunohistochemistry using antibodies against NGF-R (1:1000, Abbiotec), S-100(1:200, Serotec), neurofilament(1:200, Millipore), anti-synaptophysin (Abcam, 1:200 dilution), and anti-TNF-α (Abcam, 1:300 dilution) to detect the inflammatory response associated with nerve regeneration in sciatic nerve, dorsal root ganglion cells, and the brain. The immunoreactive signals were observed using AF 488 donkey anti–mouse IgG and AF594 donkey anti-rabbit (Invitrogen; 1:200 dilutions) and were then viewed using an Olympus BX40 Research Microscope.
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2

Western Blot Analysis of Adipogenic Markers

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Total proteins were extracted using RIPA lysis buffer within 1% protease inhibitor cocktail (Millipore, Bedford, MA, USA) 0.1 mM according to the manufacturer’s instructions. Protein samples were separated using 10% sodium dodecyl sulfate-polyacrylamide gels and transferred to a nitrocellulose membrane (Millipore, Bedford, MA, USA). After blocking, the membranes were then incubated at 4 °C overnight with the following primary antibodies: anti-HIF-1α, anti-VEGF-A, anti-JNK, anti-PPAR-γ, anti-C/EBP-α, anti-FABP4 (1:1000, all Cell Signaling Technology, Danvers, MA, USA), anti-NF-κB p65, anti-p-IκB, anti-TNF-α, anti-MCP-1 (1:1000, all Abcam, Cambridge, MA, USA), anti-SFRP5, anti-Wnt5a, anti-Wnt10b, anti-β-catenin (1:1000), and anti-β-actin (1:5000, all GeneTex, Irvine, CA, USA). After washing, the membranes were probed with corresponding second antibodies (1:3000, GeneTex). The density of the individual protein bands was quantified by densitometric scanning of the blots using ImageJ software.
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3

Investigating SIRT6-Mediated Immune Regulation

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All general reagents and chemicals were purchased from Sigma–Aldrich, unless otherwise specified. Supplements and media for cell culture were from Invitrogen. Antibodies were purchased from Cell Signaling Technology (anti-Sirt6, catalog no.: 12486; anti-p27, catalog no.: 3688; anti–histone H3, catalog no.: 4620; and antiubiquitin, catalog no.: 3936), Abcam (anti-TNFα, catalog no.: ab183218 and anti-Sirt6, catalog no.: ab191385), or Sigma–Aldrich (anti–beta actin, catalog no.: A5441 and anti–alpha tubulin, catalog no.: T6074). Antibodies for flow cytometry were purchased from Thermo Fisher Scientific (LIVE/DEAD Fixable Far Red Dead Cell Stain Kit; catalog no.: L10120), BioLegend (CD19-APCCy7, catalog no.: 115530; T-cell receptor beta (TCRβ)-APCCy7, catalog no.: 109220; Ly6G-APCCy7, catalog no.: 127624; CD11b-BV510, catalog no.: 101245; and ZOMBIE-AQUA, catalog no.: 423102), or Millipore (F4/80-PE, catalog no.: MABF1530).
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Western Blot Analysis of Hepatic Proteins

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The hepatic tissue was homogenized into cold lysis buffer and the lysate was centrifuged and the supernatant was collected in a fresh tube supplemented with protease inhibitor cocktail (Himedia, India) and kept at −80 °C.32 The protein samples were heat denatured and separated by SDS-PAGE followed by electrotransfer to the nitrocellulose membrane. The membranes were blocked in blocking buffer and then exposed to specific primary antibodies diluted in the blocking buffer and kept overnight at 4 °C. The primary antibodies used were rabbit polyclonal anti-phospho AMPK, anti-AMPK, anti-IL-6 and anti-TNF-α (Abcam, USA). The next day membrane was washed and subjected to incubation for 1 h with anti-rabbit IgG secondary antibody conjugated to horseradish peroxidase (Thermo Fisher Scientific, USA) diluted in the same blocking buffer. After a series of washes, they were exposed with the chemiluminescent ECL substrates (Thermo Scientific, USA) and the desired protein bands were detected by chemiluminescent gel documentation system (Bio-Rad, USA). β-Actin was used as a housekeeping protein for equal amounts of protein loaded into the gel. The protein bands were densitometry quantified by Image J, software (NIH, USA) and data presented as arbitrary units.
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5

Immunocytochemistry of hCECs infected with CMV

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Immunocytochemistry (ICC) was performed as previously described.34 (link) The cells were grown in chamber slides. The hCECs were fixed in ice-cold 4% paraformaldehyde for 15 minutes 1 day after infection and then permeabilized with 0.3% Triton X-100 (Sigma-Aldrich) for 5 minutes and blocked in 3% BSA for 30 minutes. The primary antibodies were anti-CMV, clone 8B1.2 (1:2000; Sigma-Aldrich); anti-ZO-1 (1:100; Abcam, Cambridge, UK); anti-TNF-α (1:500; Abcam); and anti-nuclear factor kappa B (NF-κB) (1:100; Sigma-Aldrich). Alexa Fluor 488 and 594 secondary antibodies (1:1000) were purchased from Thermo Fisher Scientific (Waltham, MA, USA). We further determined if changes induced by CMV infection were suppressed by ROCK inhibitors (Y27632, K115), because the Rho–ROCK pathway is a common downstream component of TNF-α signaling.
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6

Cytokine Expression in Mouse Stomach

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Stomach tissues obtained from mice were prepared, stained, and imaged to assess cytokine expression. The primary antibodies used for immunofluorescence staining were: lectin GS II, anti-VEGF-β, anti-IL-10 (1:200; Santa Cruz Biotechnology), anti-IFN-γ (1:50; Abcam, Cambridge, UK), anti-IL-6 (1:500; Abcam), anti-TNF-α (1:100; Abcam), anti-IL-1β (1:100; Abcam), and anti-proteinase 3 (Santa Cruz Biotechnology). Expression levels of VEGF-β, GS II, and cytokines were evaluated under confocal microscopy after immunofluorescent staining of deparaffinized tissue sections.
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7

Protein Isolation and Western Blot Analysis

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Total protein was isolated from lung tissues and RAW264.7 cells using RIPA lysis buffer (Beyotime, Shanghai, China). The protein concentration was measured using a BCA kit (KeyGen Biotech). An equal volume per sample was subjected to 10% SDS-PAGE and the proteins were transferred onto PVDF membranes (Millipore, Bedford, MA). The membranes were blocked in 5% non-fat milk and probed with anti-GGPPS1 (1:1000, Santa Cruz Biotechnology, Santa Cruz, CA), anti-IL-1β (1:1000, Abcam), anti-IL-6 (1:1000, Abcam), anti-IL-18 (1:200, Abcam), anti-TNF-α (1:1000, Abcam), anti-LC3B (1:200, Abcam), anti-ATG5 (1:1000, Cell Signaling Technology, Danvers, MA), anti-Beclin1 (1:1000, Cell Signaling Technology), anti-Rab37 (1:500, Abcam), and anti-Actin (1:1000, Santa Cruz Biotechnology). After washing, the membranes were probed with HRP-conjugated secondary antibodies (1:2000, Abcam) and the signal was detected by the classical ECL method.
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8

Quantifying Spinal Cord Cytokine Levels

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To determine IL-1β, IL-6, and TNF-α levels, the L4–L6 segments of the spinal cord were collected 4 h after intrathecal injection on day 12 postinoculation. The tissues were washed twice with PBS and cut into pieces with sterile scissors. After being milled, the tissues were digested with 1% collagenase for 25 min at 37°C. The supernatant was collected after centrifugation (12,000× g, 10 min). The samples were then boiled at 95°C for 10 min before being processed for Western blot analysis. Primary antibodies anti-IL-1β, anti-IL-6, and anti-TNF-α (rabbit; Abcam), together with the antirabbit secondary antibody, were used to detect the cytokines produced in these tissues.
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9

Western Blot Analysis of Protein Expression

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Frozen specimens from rodents were homogenized in 100 μl lysis buffer containing a mixture of proteinase and phosphatase inhibitors and then centrifuged at 15 000 rpm for 15 min at 4°C. The protein concentration was determined using a BCA Protein Assay Kit (Pierce, Rockford, IL). A total of 50 μg of protein was resolved on 12% precasted SDS‐PAGE gels, then transferred to a polyvinylidene fluoride (PVDF) membrane (Millipore, Bedford, MA). The PVDF membrane was blocked with 5% non‐fat milk in PBS containing 0.1% Tween 20 for 2 h at room temperature and then incubated overnight at 4°C with primary antibodies. The following antibodies were used in this study: GAPDH, anti TNF‐α, anti‐ASIC1, and anti‐ASIC3 antibody (1:1000, abcam, USA). After washing with Tris‐Buffered Saline, 0.1% Tween 20 Detergent (TBST), the blots were incubated for 2 h at room temperature with HRP‐conjugated secondary antibody (1:5000; Amersham Biosciences, San Francisco, CA, USA), visualized by using Electro‐Chemi‐Luminescence (ECL) chemiluminescent detection system (Amersham Biosciences).
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10

Neuroinflammation and Apoptosis Assay

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Naloxone was purchased from Taizhou Hongyao Chemical Co., Ltd. Naltrexone and phloroglucinol were supplied by Aladdin. The dialysis bags, FITC, fura-2AM fluorescent probe, nissl staining solution, hematoxylin eosin (HE) staining kit and BCA protein concentration determination kit were ordred from Beyotime Biotechnology. LPS, Fetal bovine serum (FBS), DMEM, penicillin-streptomycin (PS) and trypsin-EDTA (0.25%) were purchased from Gibco Company. Protein lysate (RIPA), phenylmethanesulfonyl fluoride (PMSF) and 4′,6-diamidino-2-phenylindole (DAPI) were bought from Beijing Solarbio Science & Technology Co., Ltd. Anti-CD11b, anti-F4/80, anti-iNOS, anti-TNF-α, anti-IL-1β, anti-IL-6, anti-IL-10, anti-Bax, anti-caspase 3, anti-bcl-2, anti-β-tubulin, anti-GAPDH, anti-β-actin were supplied by Abcam.
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