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13 protocols using ab184032

1

Immunofluorescent Analysis of SIRT3 Localization and Acetylation

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The distribution of SIRT3 into the mitochondrion (MT), the acetylation level, and the co-localization of mtHSP70 and ACOX1 were analyzed through immunofluorescent staining, based on a study by Jeong et al. [30 (link)]. Generally, samples were fixed in 4% paraformaldehyde and permeabilized with 0.3% Triton X-100 (Sigma-Aldrich, St. Louis, MO, USA) at room temperature for 10 min. The samples were blocked for 30 min in PBST with 1% BSA and 22.52 mg/mL of glycine, followed by incubation with anti-SIRT3 (ab217319; abcam, Cambridge, UK), anti-acetyl Lysine (ab21623; abcam, Cambridge, UK), anti-mtHSP70 (ab2799; abcam, Cambridge, UK), or anti-ACOX1 (ab184032; abcam, Cambridge, UK) overnight at 4 °C. Our previous studies have proved that antibodies from other various species can be used on yellow catfish [2 (link)]. Then, incubation with a goat anti-rabbit IgG H&L secondary antibody (ab150079; abcam, Cambridge, UK) continued for 1 h at room temperature. The nucleus and mitochondrion were stained with DAPI and MitoTracker Red CMXRos, respectively. Fluorescent microscopy and the laser scanning confocal microscope (Leica Microsystems, Wetzlar, Germany) were used for the observation.
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2

Evaluating Glomerular Morphology and ACOX1 Expression

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Ten-micron thick sections of formalin-fixed paraffin-embedded kidney were used for haematoxylin and eosin staining, while five-micron thick sections were used for immunohistochemical staining. Scanned haematoxylin and eosin-stained sections were used to measure glomerular area in QuPath (36 (link)), from which glomerular volume was calculated using the Weibel and Gomez formula (37 (link)). Thirty glomerular tufts per sample were manually annotated at random throughout the renal cortex, from a minimum of six animals per experimental group. Kidney sections were stained with anti-ACOX1 antibody (ab184032, Abcam) using the VECTASTAIN Elite ABC-HRP peroxidase kit (PK-6200, Vector Laboratories). An IgG isotype control (ADI-950-231-0025, Enzo Life Sciences) and no antibody control were used to confirm the specificity of staining. All slides were digitized using an Aperio AT2 Digital Slide Scanner (Leica Biosystems).
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3

Western Blot Analysis of BAT Proteins

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The left part of isolated rat BAT was used for Western blotting. Eight samples from each experimental group were pooled by three + three + two to obtain three samples per group. Thereafter, protein content was estimated [29 (link)]. Primary antibodies were used against ACOX1 (1 : 1000, ab-184032; Abcam, Cambridge, UK), β-actin (1 : 2000, ab-8226; Abcam, Cambridge, UK) and ACOX3 (1 : 500, sc-373977; Santa Cruz Biotechnology, Texas, USA). Immunoreactive bands in Western blots were quantified using ImageJ software (NIH, Bethesda, USA). The normalized target protein was averaged from three independent experiments and two representative bands per group were shown. The average value obtained in the euthyroid group was taken as 100%. Those from hypothyroid groups were expressed as percentages of the euthyroid group.
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4

Western Blot Analysis of Liver Proteins

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Livers were lysed in RIPA buffer supplemented with protease and phosphatase inhibitors (Thermo Fisher Scientific) using a TissueLyser II (Qiagen), followed by sonication and centrifugation (10 min at 12,000 rpm at 4°C). Protein concentration was determined by the BCA method. Proteins were separated on Bolt™ 4-12% Bis-Tris Plus gels or 7% Tris-Acetate gels (Invitrogen, Thermo Fisher Scientific), blotted onto a nitrocellulose membrane (926-31092, LI-COR) and detected as previously described (Ranea-Robles et al. 2021b (link)). The following primary antibodies were used: anti-ABCD3 (PA1-650, Invitrogen) anti-ACOX1 (ab184032, Abcam), anti-EHHADH (GTX81126, Genetex), anti-CROT (NBP1-85501, Novus Bio), anti-CPT2 (26555-1-AP, Proteintech), anti-MCAD (55210-1-AP, Proteintech), anti-CYP4A10 (PA3-033, Invitrogen), anti-HMGCR (AMAb90618, Atlas Antibodies), anti-phospho-ACC (Ser79, 3661, Cell Signaling), anti-ACC (3662, Cell Signaling), anti-MLYCD (SAB2702043, Sigma), and anti-α-tubulin (32-2500, Thermo Fisher). The anti-MVK antibody was a gift from Dr. Hans Waterham (AMC, Amsterdam) (Hogenboom et al. 2004a (link), b (link)).
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5

Quantifying ACOX1 Protein Expression in ICP Placenta

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Frozen tissues from both groups were dissolved in a RIPA lysis buffer containing 50mM Tris(pH 7.4), 150mM NaCl, 1% NP-40, 0.5% sodium deoxycholate and 1% (v/w) protease inhibitor cocktail (PMSF) for protein extraction as described above. Samples containing 100 mg of protein from ICP patient and normal control placental tissue were electrophoresed on a 12% SDS polyacrylamide gel and transferred to a nitrocellulose membrane (GE Healthcare, San Francisco, CA, USA). Membranes were blocked in Tris-buffered saline (TBS) containing 5% non-fat milk powder for 1 h and incubated overnight with anti-ACOX1 (ab184032, 1:1000; Abcam, Cambridge, MA, USA) antibodies diluted in TBS/5% non-fat milk powder. Tubulin was used as a loading control. Membranes were washed three times (10 min each) with TBS and incubated for 1 h with horseradish peroxidase (HRP)-conjugated goat anti-rabbit IgG (1:1000; Beijing ZhongShan Biotechnology, Beijing, China). Specific proteins were detected using an ECL kit and AlphaImager (FluorChem 5500; ProteinSimple, San Jose, CA, USA). Protein expression levels were analyzed using AlphaEaseFC software (ProteinSimple).
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6

Protein Extraction and Immunoblot Analysis

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Protein was extracted from frozen mouse kidneys and immunoblot analysis was performed as previously described 10 using the following primary antibodies: anti-KIM-1 (AF1817, RD Systems), anti-SOX-9 (NBP1–8551, Novus Bio), anti-SPTLC2 (51012–2-AP, Proteintech), anti-ABCD3 (PA1–650, Invitrogen), anti-ACOX1 (ab184032, Abcam), anti-EHHADH (GTX81126, Genetex), anti-HSD17B4 (15116–1-AP, Proteintech), anti-ACAA1 (12319–2-AP, Proteintech), anti-SCPx (HPA027135, Atlas Antibodies), anti-CROT (NBP1–85501, Novus Bio), anti-CPT2 (26555–1-AP, Proteintech), anti-MCAD (55210–1-AP, Proteintech), anti-α-tubulin (32–2500, Thermo Fisher), anti-citrate synthase (GTX628143, Genetex), and anti-AMACR 16 (link).
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7

Renal Protein Expression Profiling

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Protein was extracted from renal tissues. Membranes were incubated with primary antibodies against ACOX1 (ab184032,1:1000, Abcam, Cambridge, United Kingdom), PPARα (ab126285, 1:1000, Abcam, Cambridge, United Kingdom), SCD (ab39969, 1:1000, Abcam, Cambridge, United Kingdom), FASN (ab128870, 1:10000, Abcam, Cambridge, United Kingdom), and β-actin (ab8226, 1:1000, Abcam, Cambridge, United Kingdom) at 4°C overnight, and then the membranes were further incubated with horseradish peroxidase-conjugated secondary antibodies (GB25301, 1:5000, Servicebio Co., Ltd., Wuhan, China). Protein band densities were detected by chemiluminescence (Cell Signaling Technology, Danvers, MA), followed by scanning using an Epson V300 scanning system (Epson, Suwa, Japan), analyzed by AlphaEaseFC software (Alpha Innotech, San Leandro, CA), and quantified by ImageJ 1.4 software (NIH, Bethesda, MA).
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8

Immunoblotting for Cellular Signaling

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All chemical reagents were obtained from Sigma (St. Louis, MO, USA), except where noted. Western blotting detection reagents were obtained from Amersham (Bucks, UK). RNAzolTM B was obtained from TEL‐TEST Inc (Friendwood, TX, USA). Antibodies against α‐tubulin (sc‐5286), β‐actin (sc‐47778), TFIIB (sc‐271736), Histone H1 (sc‐8615), p‐Akt (sc‐101629), total‐Akt (sc‐1618), p‐PERK (sc‐32577), PERK (sc‐13073), IRE (sc‐390960), ATF6 (sc‐22799), CHOP (sc‐575), PPARγ (sc‐7196), pS‐IRS (sc‐33956), pT‐IRS (sc‐17196), IRS (sc‐559) and SREBP‐1c (sc‐365513) were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Antibodies against p‐IRE (ab48187), PPARα (ab24509), CPT1α (ab128568) and Acox1 (ab184032) were purchased from Abcam (Cambridge, UK). Antibodies against FoxO6 and p‐FoxO6 (Ser184) were obtained from Dr Dong (University of Pittsburgh, Pittsburgh, PA, USA). Horseradish peroxidase‐conjugated anti‐rabbit IgG and horseradish peroxidase‐conjugated anti‐mouse IgG antibodies were obtained from Amersham (Bucks, UK). Horseradish peroxidase‐conjugated anti‐sheep/goat IgG from donkey was purchased from Serotec (Oxford, UK). Polyvinylidene difluoride (PVDF) membranes were obtained from Millipore Corporation (Bedford, MA, USA). PPARα‐siRNA (20 nmol/L) was obtained from Integrated DNA Technologies (IDT; Coralville, Iowa).
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9

Immunohistochemical Analysis of Lipid Metabolism

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Immunohistochemistry staining was performed. Briefly, the sections were preincubated with 3% hydrogen peroxide and blocked with 2.5% normal horse serum. Then, the slides were incubated with anti-ACOX1 (ab184032, 1:200, Abcam, Cambridge, United Kingdom), PPARα (ab233078, 1:200, Abcam, Cambridge, United Kingdom), SCD (ab19862, 1:300, Abcam, Cambridge, United Kingdom), and FASN (ab22759, 1:200, Abcam, Cambridge, United Kingdom) primary antibodies overnight at 4°C and then with the secondary antibody (GB25301, 1:500, Servicebio Co., Ltd., Wuhan, China) at room temperature for 60 min. ImageJ 1.4 software (NIH, Bethesda, MA) was used to quantify the protein expression.
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10

Western Blot Analysis of Metabolic Enzymes

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Cells and tissues were lysed in RIPA buffer supplemented with protease and phosphatase inhibitors (Thermo Fisher Scientific), followed by sonication and centrifugation (10 min at 12,000 rpm at 4°C). Protein concentration was determined by the BCA method. Proteins were separated on Bolt™ 4–12% Bis-Tris Plus gels (Invitrogen, Thermo Fisher Scientific), blotted onto a nitrocellulose membrane (926–31092, LI-COR) and detected using the following primary antibodies: anti-ACOX1 (ab184032, Abcam), anti-ACAA1 (12319–2-AP, Proteintech), anti-EHHADH (GTX81126, Genetex), anti-HSD17B4 (ab128565, Abcam), anti-HMGCR (AMAb90618, Atlas Antibodies), anti-citrate synthase (GTX628143, Genetex), and anti-α-tubulin (32–2500, Thermo Fisher). Anti-MVK and anti-PMVK antibodies were a gift from Dr. Hans Waterham (AMC, Amsterdam) [36 (link), 37 (link)]. Proteins were visualized with goat anti-mouse and goat anti-rabbit secondary antibodies IRDye 800CW and IRDye 680RD (LI-COR, 926–32 210, 926–68 070, 926–32 211, 926–68 071). Band intensities were quantified using the Fiji distribution of ImageJ 1.x [38 (link)].
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